Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70190 194 / 6e-63 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (.1.2) AT4G36420 90 / 2e-22 Ribosomal protein L12 family protein (.1) AT4G37660 77 / 1e-17 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) AT3G06040 75 / 1e-16 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) AT2G03130 71 / 6e-16 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) AT3G27850 44 / 1e-05 RPL12-C ribosomal protein L12-C (.1) AT3G27830 44 / 2e-05 RPL12-A ribosomal protein L12-A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038367 [exp] 280 / 2e-96 AT1G70190 243 / 3e-82 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (.1.2) Lus10028336 [exp] 94 / 5e-24 AT4G36420 176 / 1e-56 Ribosomal protein L12 family protein (.1) Lus10041783 [exp] 91 / 7e-23 AT4G36420 174 / 5e-56 Ribosomal protein L12 family protein (.1) Lus10031756 [exp] 88 / 2e-21 AT3G06040 202 / 2e-66 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) Lus10023839 [exp] 87 / 3e-21 AT4G37660 155 / 1e-48 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Lus10000093 [exp] 87 / 3e-21 AT4G37660 155 / 1e-48 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Lus10031180 [exp] 86 / 2e-20 AT3G06040 202 / 2e-66 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) Lus10021011 [exp] 82 / 3e-19 AT4G37660 157 / 3e-49 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Lus10013078 [exp] 50 / 2e-07 AT3G27830 175 / 7e-56 ribosomal protein L12-A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G074800 [exp] 207 / 7e-68 AT1G70190 204 / 1e-66 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (.1.2) Potri.007G019100 [exp] 93 / 1e-23 AT4G36420 127 / 2e-37 Ribosomal protein L12 family protein (.1) Potri.015G077200 [exp] 87 / 4e-21 AT3G06040 132 / 3e-39 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) Potri.004G224300 [exp] 83 / 1e-19 AT4G37660 154 / 4e-48 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Potri.001G346100 [exp] 46 / 4e-06 AT3G27830 146 / 1e-44 ribosomal protein L12-A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00542 [flax] [poplar] Ribosomal_L12 Ribosomal protein L7/L12 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10036228 pacid=23169395 polypeptide=Lus10036228 locus=Lus10036228.g ID=Lus10036228.BGIv1.0 annot-version=v1.0 ATGAGTTTGGTTCTAAGATTGCGACATCGCTTGCAAAATAGCTTGTATGCAAAATCAGCCCTTCCACTCTTGAATCAGACAAGCATCTTCAATGGTGTTC CATCTCGTAGCCTTGCACAAGCTGCTATGAAAGAAGAAGAGGAAGAAGAAGTAGAAATTGATCAGAGGCGGCTCCCAGCAGACTACGACCCCGCAACATT CGATCCCACCGAGCACCGTAGCCCTCCCACGGAGCGAGTTTTCAGGCTAGTTGACGAGGTTGCCAATCTGACATTAATGGAGGTGGCAGAGCTGGGTTCG ATTATAATGAAAAGGAAAGGAATGACTGAACCGCCAGTTGTGGGAGTTATCAAGGGCGGAGTAGCTGCTGGGATGGCAATGCAGAAGGGAGGAGGATCGG GTTCGGCCAAGGAAGAGAAGAAGCCAGAGAAGACGGTTTTCGAGCTGAAGTTGGAGTCTTATGAGGCGGCTTCGAAGATTAAGATCATTAAGGAAGTGAG GAGCTTTACTGACTTGGGACTTAAGGAAGCGAAGGATCTGGTGGAGAAGACTCCGTCGGTGTTGAAATCGGGCGTATCGAAGGAGGAAGGCGAGAAGATT ATCGAGAAGTTGAAAGCTTTAGGTGCTAAAGTTGTGTTGGAATGA
AA sequence Show only first row Show all	>Lus10036228 pacid=23169395 polypeptide=Lus10036228 locus=Lus10036228.g ID=Lus10036228.BGIv1.0 annot-version=v1.0 MSLVLRLRHRLQNSLYAKSALPLLNQTSIFNGVPSRSLAQAAMKEEEEEEVEIDQRRLPADYDPATFDPTEHRSPPTERVFRLVDEVANLTLMEVAELGS IIMKRKGMTEPPVVGVIKGGVAAGMAMQKGGGSGSAKEEKKPEKTVFELKLESYEAASKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKSGVSKEEGEKI IEKLKALGAKVVLE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70190			Ribosomal protein L7/L12, olig...		Lus10036228 [exp]	0	1
AT1G08460		HDA8, HDA08, AT...	histone deacetylase 8 (.1)		Lus10001850 [exp]	12.7	0.9072
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10027426 [exp]	19.3	0.9015
AT5G63040			unknown protein		Lus10027687 [exp]	20.5	0.8688
AT2G19740			Ribosomal protein L31e family ...		Lus10038272 [exp]	21.4	0.8398
AT2G43870			Pectin lyase-like superfamily ...		Lus10002124 [exp]	21.4	0.8908
AT2G24280			alpha/beta-Hydrolases superfam...		Lus10021325 [exp]	28.1	0.8226
AT4G35200			Arabidopsis protein of unknown...		Lus10003332 [exp]	36.1	0.8713
AT3G60050			Pentatricopeptide repeat (PPR)...		Lus10014983 [exp]	44.3	0.8418
AT2G44380			Cysteine/Histidine-rich C1 dom...		Lus10003919 [exp]	45.3	0.8794
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10011052 [exp]	47.5	0.8781

Compare expression of checked genes

Lus10036228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.