Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20040 358 / 6e-120 Pectin lyase-like superfamily protein (.1) AT4G20050 282 / 1e-90 QRT3 QUARTET 3, Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038369 [exp] 671 / 0 AT4G20040 439 / 6e-151 Pectin lyase-like superfamily protein (.1) Lus10033240 [exp] 326 / 3e-107 AT4G20040 449 / 1e-154 Pectin lyase-like superfamily protein (.1) Lus10008272 [exp] 325 / 6e-107 AT4G20040 453 / 4e-156 Pectin lyase-like superfamily protein (.1) Lus10001376 [exp] 309 / 1e-100 AT4G20040 417 / 4e-142 Pectin lyase-like superfamily protein (.1) Lus10026120 [exp] 303 / 2e-98 AT4G20040 406 / 6e-138 Pectin lyase-like superfamily protein (.1) Lus10036231 [exp] 278 / 5e-89 AT4G20050 493 / 2e-172 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Lus10038370 [exp] 179 / 1e-51 AT4G20050 386 / 3e-131 QUARTET 3, Pectin lyase-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G075300 [exp] 415 / 3e-142 AT4G20040 521 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G075400 [exp] 388 / 2e-132 AT4G20040 530 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G075500 [exp] 378 / 2e-127 AT4G20040 546 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G159900 [exp] 285 / 1e-91 AT4G20050 604 / 0.0 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Potri.003G074600 [exp] 283 / 1e-90 AT4G20050 602 / 0.0 QUARTET 3, Pectin lyase-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036230 pacid=23169448 polypeptide=Lus10036230 locus=Lus10036230.g ID=Lus10036230.BGIv1.0 annot-version=v1.0 ATGAAGCATCTCCATCATCGTTCTTCCACTAAATTTTACCTCCTCGTTCTGCTAGCAGGATTGCTTCAGAATTCTTCCTGTTACACCATAGACAATAATA AGCTATCAGAATTCCAGGAAAAGCTTCAACGTAAATCTTCTTCTGCTTCTTCGTCAGCTTCCACCGTCAAGAATTCTTCTTCCCCGACTCTTCACCTCAA ACGGTTTCAGTTGCAGAGAGGGAAAGTGTTCTACCCAATCGGGTACGGAGCTGACCCGAGCGGCTCGATTGACAGTCATGACGCGATTCTCAGAGCTATC GACGACGCATTTCGATTGCAGAAGCACCACCGCCATCAATTGCTTCCCGGAATTCAAGATTTGGGTGGGATCGTCCTCGATCTCCAAGGCGGAAACTTCC TCGTCAGCAAACCGATCCAGCTCCCTCCTGGCCGTGGCAACTTCGTGGTAAGAAGCGGGACCCTACGGGCGACCAATGATTTTCCAGGAAACCGCCACCT CATCGAGCTATGGTCAACGAATTCGCAGCAGAAGCCGGGGAAAGGATCATATTACGAAGGGATTACATTCAGAGACATCCTCTTCGATTCCACCTACCGG GGCGGCGGAATCCGGGTCGTGGACTCCGTCAGGATCCGAATCGACCACTGCTTCTTCCTCCATTTCACGACTCAGGGGATCCTGGTGATCAAGGGCCACG AGACCTTCGTCTCCAACTGCTTCCTCGGCCAGAACCCCACCGTCGGCGGCGACCGCAACGAGATCCGCTACTCCGGCACGGCGGTCGACATCGACAGCAA CGACAATGCGCTCACCAACGTCGCCATCTTCTCCGCCGCCGTCGGCGTCGTCCTCAGGAGCGAGGCCAACACCGTCACCGCCGTCCACTGCTACAACAAG GCCAACGTCTACGGTGGCGTCGGGATTGTGGTGAAGCCCGAGGCGTCGCTGACGAGGATCACGGGTTGTTATATGGATTTCACCGATGTGGTGATCGAGG ATCCGGATCAGGTCCGGGTCACAGACGGGCTGTTCATCGGTGGGGCGAACGTGGTGTTGAAATCGATTAGGGGCTCGATTTCGGGGCTGAATGTGGAAGG GAATATGTTTAGGGGGGTTTCTCACTTTCAGTACGCGTTTCACGTTCGAGGCGGCGGAGGCGGAGAGAACGTGACGCACTGGGTGAGCGGAGTTAGGAGG AATGCGGTGGTTGTGGAGAGTAGCGCGGTGGTGAACGCCGTGGTATCGGTGGTTGTTGATCAGTACAATGCGGTGGATGAAACTAACTTTTTGCGATAA
AA sequence Show only first row Show all	>Lus10036230 pacid=23169448 polypeptide=Lus10036230 locus=Lus10036230.g ID=Lus10036230.BGIv1.0 annot-version=v1.0 MKHLHHRSSTKFYLLVLLAGLLQNSSCYTIDNNKLSEFQEKLQRKSSSASSSASTVKNSSSPTLHLKRFQLQRGKVFYPIGYGADPSGSIDSHDAILRAI DDAFRLQKHHRHQLLPGIQDLGGIVLDLQGGNFLVSKPIQLPPGRGNFVVRSGTLRATNDFPGNRHLIELWSTNSQQKPGKGSYYEGITFRDILFDSTYR GGGIRVVDSVRIRIDHCFFLHFTTQGILVIKGHETFVSNCFLGQNPTVGGDRNEIRYSGTAVDIDSNDNALTNVAIFSAAVGVVLRSEANTVTAVHCYNK ANVYGGVGIVVKPEASLTRITGCYMDFTDVVIEDPDQVRVTDGLFIGGANVVLKSIRGSISGLNVEGNMFRGVSHFQYAFHVRGGGGGENVTHWVSGVRR NAVVVESSAVVNAVVSVVVDQYNAVDETNFLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20040			Pectin lyase-like superfamily ...		Lus10036230 [exp]	0	1
AT4G34210		ASK11	SKP1-like 11 (.1)		Lus10041874 [exp]	5.5	0.9010
AT1G76250			unknown protein		Lus10012274 [exp]	10.6	0.9085
					Lus10018742 [exp]	13.0	0.9020
AT1G33800			Protein of unknown function (D...		Lus10034373 [exp]	20.0	0.8944
AT1G70500			Pectin lyase-like superfamily ...		Lus10030888 [exp]	22.0	0.9004
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Lus10041247 [exp]	25.9	0.8926
AT1G23460			Pectin lyase-like superfamily ...		Lus10030602 [exp]	32.0	0.8869
AT2G28500	AS2	LBD11	LOB domain-containing protein ...		Lus10040373 [exp]	38.1	0.8708
AT1G43790		TED6	tracheary element differentiat...		Lus10018925 [exp]	38.8	0.8823
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10037381 [exp]	40.7	0.8802

Compare expression of checked genes

Lus10036230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.