Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20050 433 / 8e-149 QRT3 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) AT4G20040 328 / 1e-107 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038370 [exp] 607 / 0 AT4G20050 386 / 3e-131 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Lus10038369 [exp] 304 / 3e-98 AT4G20040 439 / 6e-151 Pectin lyase-like superfamily protein (.1) Lus10033240 [exp] 290 / 1e-92 AT4G20040 449 / 1e-154 Pectin lyase-like superfamily protein (.1) Lus10008272 [exp] 285 / 1e-90 AT4G20040 453 / 4e-156 Pectin lyase-like superfamily protein (.1) Lus10036230 [exp] 263 / 3e-83 AT4G20040 363 / 4e-122 Pectin lyase-like superfamily protein (.1) Lus10026120 [exp] 264 / 2e-82 AT4G20040 406 / 6e-138 Pectin lyase-like superfamily protein (.1) Lus10001376 [exp] 260 / 3e-81 AT4G20040 417 / 4e-142 Pectin lyase-like superfamily protein (.1) Lus10008700 [exp] 47 / 9e-07 AT4G20040 59 / 1e-11 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G159900 [exp] 496 / 3e-173 AT4G20050 604 / 0.0 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Potri.003G074600 [exp] 483 / 4e-168 AT4G20050 602 / 0.0 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Potri.003G075400 [exp] 353 / 3e-118 AT4G20040 530 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G075300 [exp] 342 / 3e-113 AT4G20040 521 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G075500 [exp] 320 / 2e-104 AT4G20040 546 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036231 pacid=23169386 polypeptide=Lus10036231 locus=Lus10036231.g ID=Lus10036231.BGIv1.0 annot-version=v1.0 ATGTCCGTAAACACTCTGTTCCCTCTGTTTCTCTTCACGGCGGCCATTGTCTCTTCCGCCCTCGCCGGCGGAATCAGCCACCACCAGCAAATTTTATCAA TGCAGGAGCTCAAGTCCTTCATCGCCTCCCGACGTCAATTAGCCACCACCGCTCCTTCCCCTTCTCCGATCGCCGTCTCTAAATCTCCGCCGCCGCAGGG CGGCGGTTATTCTTCATCACTTGTATATCAATTCACCGCCTACGGCGCCGATCCGACCGGCGTCAAGGACAGCTCCGACGCAATCTCTAGACTACTTGCC GATGTAGTCAAAGGACCCACCTCCGCCCCCACCTCTGGCACAATGCTCGACGGAATAAAGAATAACGGCGGCGCTCAAATCCATCTCGGCGGTGGAAACT ACGTCATCACCAAACCGGTCAAGTTCCCTTCCGCCGGCGTCGGAAACATCGTGATAGCTGGAGGGACGCTGCGAGCGTCGGATGATTTCCCGACGGATGG TTACCTGATCGACCTATCGGCCACGTCGTCACAGACGTACGATTACGAGTATATTACATTCCGTGACCTAATGCTGGACTCGAATTTCAGAGGCGGCGGC GTATTCATCAAAAACGCCGTCCGAGTCACCGTCGACAACTGCTACATCACCCATTTCAACACCGACGGCGTCATCGTCACCGGCGGCCACGAGGCGCTCG TCAGGAACACGTTCATCGGCCAGCACATCACTGCCGGCGGAGACCCAGACGAGCGGAAGTTCACCGGCACCGGGATCAACATCAAGAGCAACGACAACGC GATCACCGACGTGGTCGTGTTCTCCGCCGCCGTCGGAATCATGATCAGCGGCCAGGCCAACATCCTCACCGGCGTCCACTGCTACAACAAGGCGTCCGGG TTCGGCGGCACCGGGATCTACATCAAGCTCCCGGGGCTCGCCCAGACGAGGATCGTCAACTCCTATCTCGACTTCACCGGAATCGTCGCCGAGGATCCGG TCCAGCTGACGATCTCCGACAGCTTCTTCCTCGGCGGATCGTTCGTGGTTTTCAAGTCGGTGAACGGCGTCGCGAAAGGGGTGAACGTGGTGAACAACAT GTTCAACGGCGGCGGCGGGGACATTGTGCAATTGGACGGGAACTTCAAAGAAATCGAGGGAGTTGTGGTCGACGGGAACAACGTCCACGGCGGGATGAAC CTGAAGGCGACGGCGGCGCAGGGATCGACGACCGGGAACGGGACCATGTGGACGGTGGATTTCAATTCGGTTCTGTTGTTTCCAGATAGAATCAACCATG CGCAGTACTCGCTGAGTTCTAGCGGGACGGCGTTTCCGAGACACGCGCTTAGGAATGTGACCGGGAATCAGGTGGTGGTGGAATCTGACGTGGCGGTTAC GGCGAGTGTGTTCGTCGCCGTGAGTCAGTAA
AA sequence Show only first row Show all	>Lus10036231 pacid=23169386 polypeptide=Lus10036231 locus=Lus10036231.g ID=Lus10036231.BGIv1.0 annot-version=v1.0 MSVNTLFPLFLFTAAIVSSALAGGISHHQQILSMQELKSFIASRRQLATTAPSPSPIAVSKSPPPQGGGYSSSLVYQFTAYGADPTGVKDSSDAISRLLA DVVKGPTSAPTSGTMLDGIKNNGGAQIHLGGGNYVITKPVKFPSAGVGNIVIAGGTLRASDDFPTDGYLIDLSATSSQTYDYEYITFRDLMLDSNFRGGG VFIKNAVRVTVDNCYITHFNTDGVIVTGGHEALVRNTFIGQHITAGGDPDERKFTGTGINIKSNDNAITDVVVFSAAVGIMISGQANILTGVHCYNKASG FGGTGIYIKLPGLAQTRIVNSYLDFTGIVAEDPVQLTISDSFFLGGSFVVFKSVNGVAKGVNVVNNMFNGGGGDIVQLDGNFKEIEGVVVDGNNVHGGMN LKATAAQGSTTGNGTMWTVDFNSVLLFPDRINHAQYSLSSSGTAFPRHALRNVTGNQVVVESDVAVTASVFVAVSQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Lus10036231 [exp]	0	1
					Lus10022574 [exp]	2.0	0.7826
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10033519 [exp]	4.9	0.7666
AT1G30825		DIS2, ARPC2, AR...	DISTORTED TRICHOMES 2, ACTIN-R...		Lus10002867 [exp]	13.0	0.7630
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Lus10027223 [exp]	23.7	0.7474
					Lus10015577 [exp]	25.3	0.6663
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004180 [exp]	46.7	0.6600
AT3G14260			Protein of unknown function (D...		Lus10008485 [exp]	46.8	0.7367
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10000203 [exp]	63.2	0.6807
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024367 [exp]	69.2	0.6149
					Lus10039764 [exp]	73.2	0.6816

Compare expression of checked genes

Lus10036231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.