Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20060 600 / 0 EMB1895 EMBRYO DEFECTIVE 1895, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038371 [exp] 854 / 0 AT4G20060 308 / 5e-93 EMBRYO DEFECTIVE 1895, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G118800 [exp] 830 / 0 AT4G20060 709 / 0.0 EMBRYO DEFECTIVE 1895, ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036232 pacid=23169407 polypeptide=Lus10036232 locus=Lus10036232.g ID=Lus10036232.BGIv1.0 annot-version=v1.0 ATGGAGAAGATTTCTGCAGCTTCAGCCATGGAATGGAGCATTGAGCTAGACAAAGGCCTCCGTTCCAAGAAGCCTGGTCAAGCTGTCACGGCCGTACAAC TGACTGGGCAAAGGCTCTTGCAGTGGGATCAGGAACCAGAACCCACAACGGTAGCTTATAAGATATTCGGCTTAGTTCCTGGGGAGGAGAGGCTCTTTCT CAACAGCATTCTTTTGAAGCTTGCTGATGCCTTCAGGTTAGGTGCCAAGGATTTGAAGGTTTCTGTTGTAAGAGTATTTCTAACACTGTTTAAGAAGAGA AGGAAAACTCAACGGTATGAAGGGATTTTGTTGAAGGCCAATATATGTAATCCCTTGGAACTTCTGAAGAAAGCCAAAGCTATTTTTGATACTGGCGATT TAGAGCTTAGAGTGCTGGCTTTGGTCCTCTTTGGTTGCTGGGCTGATTTTGCCAAGGATAATGCTCATATAAGATATTTGATACTTTCCAGCTGTGTCTC CTCTGATGTATTGGAGGTAAAGGCATCTTTATTTGCTGCAGGTTGCTTTTGTGAGTTTGCGGATGACTTTGCTCAAGTCGTCTTAGAAATGCTGCCTCAT ATATTGACTTCAACTGAGCTATCACCATCTTTACGGGTAGCTGGAGCACGTATTTTGGCAAAAGTGGGATACTTCAGTCCTACTGCAAACAATGCATACA AGATGGGTCTGAAGCTGCTGCAAAGCTCTTCAGATGAGGATCTATCAGTCTCGTTTCTACTTTCGCTCTCAAAATTGGCATATAACTCAAGCACTCTTCT GACTGACCAGGTAGAAGTGGTTTTATCATTTCTCGGCCAAGATAAACCTTTTCAGCTGCAATCAACAGCCTTAAGGTGCCTTGATGTTTTGCTATCCCAA GTTTGTCTCTATCCTGTTGGTCTCCAGAGCATTAGACCCTTACTAAGGATTGTGCATGGAACTGAATTTCCCATATCTATGCAATGCAAAGCACTACAAG TTCTGCATAAGATGTTGATGTACCAAGAAACACAGCTGCTACATGGAGACCTCATGCTTGAATTTTTTACGGTCTCTATCATTTTCGAGAACTCAGCCCA GTCACATCTAATGCCCAAACGTGTTCTAGCCATCTATGTCCTTGCAGATGTGATCATTAAGCTTAGTGGACAAACTGGCATGGAATTTGATGGAAGTTCT TCCTTCCCTTCCCTAACATGGATCATTTCGACCATTTTTGACGAGATAATCTTACTCGTGAAGCAAGTGTTGGTTGGTGATAATCAGATGTGGTCAGGAG CACTCCAAGAGGTGCGGAACTTGCTTAATCTTCTTCATTTTGCCGCTGGAGAACACCTTGATTTGGGAGTGACTTTATTGGACAAAATTAGTTTCGTAAT GGAGCATCTTGTCAACCGCTTGCATGAGAAGGCCACAGATTCAACACAAACTTCTCCACTTGTTCAGGAGATTCATGATCATGGAGCAAAGAGTTCTAAC ACTATTCTGAATTTTGCAGTAGCATGCGTCCAGAATATAATTGGACTAGGTGCCAGTTTTGCTGAAGTACTTGCCAAAATAAAGCGCTTGGTTGATTGTG TTCACAGGTGCAGTGTATTTGATTCTTATGTCCATGCACTTTACTCTATCGCGGTGCATTCTGGAGTCTTTTGGAATTGTGTTGAGAATTCAACTTATGA TATCTTGATTAAGCATGAAATTTTCACCCTCAACTGTGCAATGAAGATGTTGAATGAGGGGAATTTCTGGAAGTTGTACAAGACTGCCGTATTTGCAGCG GGCCAAGGAGCTTGGGTCACAGCTGCATTTATATTTGAACTAGTAACATGCAAGGTTCAATCAGAATCGTCGTCTTGCTGGTTAAAATCACTAGCTCAGT ATGCACAATGTGAGATGAACATCCAGTTGTTTCTCTTACCAAAACTAAGGTCCAGTTTAGCAGAATGGTTGCAAACAAACGACATCGAAGTTCCCGTCTT CAGGAACATCTCTTGTGGCAATGATCAAGGTGATACTGCTCAAATTTGTGAAGCTAGTTACTCTGAAGTGCTTTTCAGAGCACAAAGCAGTGCATGTTCT TCTGGGGAAACATTGGATCTTGTAGTCTCGTCTGGCAGTTCATTTTATTTCCAGAGATGGTTTTTGGACTTGAGAACAAAGGTTCTTGCAACTGTATATG ATTTACTCAAAGTATTAGCGGTTGATGTTCTCAGTTCTTCACAACAAGTTGCCGAGTGTTCATTACGATTGACGAGACTAGCTAAGGAACTCGATCTAGT TTGCATTTCTTTCGTCGATATGGACATCAAAAGTTTGAAAATCATCTCAGCACTTGCCTTGAGTTGTTCACTATTGGCTTTCACTGCAGGGATATCTGCT TCTACTGCAAACCTGGAGGCAAACAAAAGTAGTGACCTTTCTGCAAATAGAAGGTTGATAGAAGATTTGGCGGGTCGGTTGGGGCAAATCGATCCCGAAA CCTGTTCTGATTTGTTCCATCTCTTGGATATCAATTGTGGCATTGACTATACTCACGTGCAACCTATGAATCAGAAGCTGAAAATCCGCGATGCAAGAGA TGTACTCAGAATCTGTAACTATGCTGTTTCTGGTATTGTTGGGTTACAAACCGAGTCGAAAAGAGTTGACAATCCGGAAGTGATCCACAAAGTTGCCGGA GAATGCTTTCAGCTTCTGTCAAATGCAATTGTGAAATGGGTCAACACTCCTTTCCACCTTCCTAAGTACTTCTTGAAAACAAGGCCATGCCTTGTGGCAG AGCTGTTTGCCTTCGATGCGGATGCAATCAACCAAGAGGGGTTGTTGGCAGTCAAGCCAGGCTCGCACCTCTCTCTGAACCTATGCATCCAACTTAAGAA CGTGCCACCAAATCTACACATAACAAAACTATACTGCATACTCTATTCCAGCACTTGTTTCACAGAGTCCAAATTGAGCGGAAGAGGACAAGTAGAGCTC GATTTCAGAGACTGGGAAATCGCTGACATGGTGCAGGCTAACCAGAAACTGTTTTGTTACGCAAGGGACCGAGCAGATAAGACTGATCGACGCAAACGTC CCAGGGACGAAGAAGATGGTTTTTCGGTGGAAAGTATCGTTCAGTTTGAGCTGAATAAGAAAGGGCAGGGGTTTGCGAGTTGTTTGGTTGATGTATCTGG GTTTCCAGAAGGGTGTTATTATAGGATGAAGTGGCACAGCAGCTGTGTTGATAGTAGAGGGTGTTATTGGAGCCTACTTTCTCGGAATTCTGGACCTGTA TTTGCTGTAGTGAGACTACCTCCTGGTGGTTCAGCTGTATAA
AA sequence Show only first row Show all	>Lus10036232 pacid=23169407 polypeptide=Lus10036232 locus=Lus10036232.g ID=Lus10036232.BGIv1.0 annot-version=v1.0 MEKISAASAMEWSIELDKGLRSKKPGQAVTAVQLTGQRLLQWDQEPEPTTVAYKIFGLVPGEERLFLNSILLKLADAFRLGAKDLKVSVVRVFLTLFKKR RKTQRYEGILLKANICNPLELLKKAKAIFDTGDLELRVLALVLFGCWADFAKDNAHIRYLILSSCVSSDVLEVKASLFAAGCFCEFADDFAQVVLEMLPH ILTSTELSPSLRVAGARILAKVGYFSPTANNAYKMGLKLLQSSSDEDLSVSFLLSLSKLAYNSSTLLTDQVEVVLSFLGQDKPFQLQSTALRCLDVLLSQ VCLYPVGLQSIRPLLRIVHGTEFPISMQCKALQVLHKMLMYQETQLLHGDLMLEFFTVSIIFENSAQSHLMPKRVLAIYVLADVIIKLSGQTGMEFDGSS SFPSLTWIISTIFDEIILLVKQVLVGDNQMWSGALQEVRNLLNLLHFAAGEHLDLGVTLLDKISFVMEHLVNRLHEKATDSTQTSPLVQEIHDHGAKSSN TILNFAVACVQNIIGLGASFAEVLAKIKRLVDCVHRCSVFDSYVHALYSIAVHSGVFWNCVENSTYDILIKHEIFTLNCAMKMLNEGNFWKLYKTAVFAA GQGAWVTAAFIFELVTCKVQSESSSCWLKSLAQYAQCEMNIQLFLLPKLRSSLAEWLQTNDIEVPVFRNISCGNDQGDTAQICEASYSEVLFRAQSSACS SGETLDLVVSSGSSFYFQRWFLDLRTKVLATVYDLLKVLAVDVLSSSQQVAECSLRLTRLAKELDLVCISFVDMDIKSLKIISALALSCSLLAFTAGISA STANLEANKSSDLSANRRLIEDLAGRLGQIDPETCSDLFHLLDINCGIDYTHVQPMNQKLKIRDARDVLRICNYAVSGIVGLQTESKRVDNPEVIHKVAG ECFQLLSNAIVKWVNTPFHLPKYFLKTRPCLVAELFAFDADAINQEGLLAVKPGSHLSLNLCIQLKNVPPNLHITKLYCILYSSTCFTESKLSGRGQVEL DFRDWEIADMVQANQKLFCYARDRADKTDRRKRPRDEEDGFSVESIVQFELNKKGQGFASCLVDVSGFPEGCYYRMKWHSSCVDSRGCYWSLLSRNSGPV FAVVRLPPGGSAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10036232 [exp]	0	1
AT3G04820			Pseudouridine synthase family ...		Lus10009188 [exp]	1.0	0.9362
AT1G75200			flavodoxin family protein / ra...		Lus10012082 [exp]	3.5	0.9082
AT4G33200		XI-15, ATXI-I, ...	MYOSIN XI-15, MYOSIN XI I, myo...		Lus10038072 [exp]	4.5	0.8979
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10005385 [exp]	6.9	0.9146
AT1G42440			unknown protein		Lus10013232 [exp]	6.9	0.9031
AT3G21540			transducin family protein / WD...		Lus10023903 [exp]	7.3	0.8820
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10042589 [exp]	9.5	0.9018
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10016723 [exp]	9.8	0.8362
AT4G30990			ARM repeat superfamily protein...		Lus10042447 [exp]	10.5	0.9058
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10038728 [exp]	12.3	0.9068

Compare expression of checked genes

Lus10036232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.