Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20070 696 / 0 ATAAH allantoate amidohydrolase (.1) AT5G43600 166 / 4e-46 ATAAH-2, UAH ARABIDOPSIS THALIANA ALLANTOATE AMIDOHYDROLASE 2, ureidoglycolate amidohydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038372 [exp] 848 / 0 AT4G20070 706 / 0.0 allantoate amidohydrolase (.1) Lus10021221 [exp] 141 / 3e-37 AT5G43600 607 / 0.0 ARABIDOPSIS THALIANA ALLANTOATE AMIDOHYDROLASE 2, ureidoglycolate amidohydrolase (.1) Lus10022211 [exp] 128 / 2e-32 AT5G43600 603 / 0.0 ARABIDOPSIS THALIANA ALLANTOATE AMIDOHYDROLASE 2, ureidoglycolate amidohydrolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G160100 [exp] 762 / 0 AT4G20070 729 / 0.0 allantoate amidohydrolase (.1) Potri.010G076100 [exp] 159 / 2e-43 AT5G43600 680 / 0.0 ARABIDOPSIS THALIANA ALLANTOATE AMIDOHYDROLASE 2, ureidoglycolate amidohydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [flax] [poplar] Peptidase_MH PF01546 [flax] [poplar] Peptidase_M20 Peptidase family M20/M25/M40
Representative CDS sequence Show only first row Show all	>Lus10036233 pacid=23169329 polypeptide=Lus10036233 locus=Lus10036233.g ID=Lus10036233.BGIv1.0 annot-version=v1.0 ATGGCGTCGATTCTCCCTCTGTTCTTTCTCTTAATTTCAATCTTGGGTCGTCCTGCGTGGAGTGAGGAGGTCAATGGCCGGAGTAGGAGTGATCTGTACG TCGATATGTTGAAAGACGAGGCTGTCTCCAGACTCCTTGAACTCGGAAAGGTGAGTGATGCTGATGGATATCTTGAGAGAACGTTCATGAGCCAAGCTTC AGTGAGAGCTGCAAATCTGATACGTGGTTGGATGGAGGATGCCGGTTTGACTACGTGGATAGACTTGATGGGGAATGTACATGGTCGAGTTGATGGAGCT AATCGAAGTGCACAAGCATTATTGATTGGTTCTCATTTTGATACCGTCATTGATGCAGGGATTTTTGACGGGGCGCTAGGTATTGTCTCAGCAATATCAG CTTTGAAGGTTTTGAAAACCACTGCAAGTTTGGAGAAACTAAAACGGCCAGTTGAGATTATCGCCTTCAGTGATGAGGAGGGGGTGAGATTTCAATCTAC TTTTCTTGGCAGTGCTGCTCTAGCTGGAATCCTACCCGTGTCTACATTAAAGGCAACTGATAAGAGTGGTGCAACGGTGCAAGATGTTCTTAAGGAGAAC TCTTTTGCAATTACAGAAGAAAGCTTACCACAACTGAAGTATGATCCGAACTCTGTCTGGGGTTATGTTGAGGTCCATATTGAACAAGGACCTATTCTGG AATGGGTTGGCTTTCCGGTCGGTGTGGTGAAAGGCATTGCTGGACAGACACGGCTAAAGGTCACAGTCAGAGGCTCACAAGGGCATGCTGGAACAGTTCC AATGTCCATGCGTCAGGATCCAATGGCTGCAGCTGCAGAACTACTCGTGAAACTTGAAACCATTTGCAAGAGTCCGAAAGACTTTCTATCCTATGACAGT CAATGCAGTGACGCGACAGTAGAATCGCTTTCCAATTCGCTTGTCTGTACTGTTGGCGAGATATCGACTTGGCCAAGTGCAAGCAACGTAACCTTCACGG TGGACCTGCGCGCAATGGATGACATGGGACGTGAAGCCGTCTTGTACGAATTATCCAATCAAGTATATCGGATATGTGACAAACGATCTGTCTCTTGCAT TATCGATCGCAAGCATGATGCAGATGCAGTGCTCTGCGATTCAGAATTAAGTTCGCAGCTGAAGGTTGCGGCCAATTCGGCTGTCCAGAGAATGACGGGT GAGGTTCAAGAGGACGTCCCTGTGCTGATGAGCGGGGCTGGCCACGATGCAATGGCTATGGCTCATCTAACCAAGGTGGGAATGCTATTTGTAAGGTGCA GGGGAGGAGTAAGCCACTCTCCAGCAGAGCATGTGTTGGATGATGATGTTTGGGCTGCTGGGTTGGCTCTGCTTGCATTTCTTGAAACTCAAATGTAA
AA sequence Show only first row Show all	>Lus10036233 pacid=23169329 polypeptide=Lus10036233 locus=Lus10036233.g ID=Lus10036233.BGIv1.0 annot-version=v1.0 MASILPLFFLLISILGRPAWSEEVNGRSRSDLYVDMLKDEAVSRLLELGKVSDADGYLERTFMSQASVRAANLIRGWMEDAGLTTWIDLMGNVHGRVDGA NRSAQALLIGSHFDTVIDAGIFDGALGIVSAISALKVLKTTASLEKLKRPVEIIAFSDEEGVRFQSTFLGSAALAGILPVSTLKATDKSGATVQDVLKEN SFAITEESLPQLKYDPNSVWGYVEVHIEQGPILEWVGFPVGVVKGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMAAAAELLVKLETICKSPKDFLSYDS QCSDATVESLSNSLVCTVGEISTWPSASNVTFTVDLRAMDDMGREAVLYELSNQVYRICDKRSVSCIIDRKHDADAVLCDSELSSQLKVAANSAVQRMTG EVQEDVPVLMSGAGHDAMAMAHLTKVGMLFVRCRGGVSHSPAEHVLDDDVWAAGLALLAFLETQM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20070		ATAAH	allantoate amidohydrolase (.1)		Lus10036233 [exp]	0	1
AT3G54500			unknown protein		Lus10039553 [exp]	3.5	0.7092
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10002347 [exp]	9.9	0.6708
AT4G03260			Outer arm dynein light chain 1...		Lus10018514 [exp]	12.8	0.6711
AT3G54500			unknown protein		Lus10024170 [exp]	13.2	0.6333
AT5G58520			Protein kinase superfamily pro...		Lus10031294 [exp]	20.1	0.6012
AT3G55140			Pectin lyase-like superfamily ...		Lus10025290 [exp]	22.6	0.6189
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10022187 [exp]	27.2	0.6236
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Lus10039278 [exp]	31.0	0.5714
AT5G57660	CO	COL5, ATCOL5	CONSTANS-like 5 (.1)		Lus10037636 [exp]	32.3	0.6148
AT1G01860		PFC1	PALEFACE 1, Ribosomal RNA aden...		Lus10009319 [exp]	42.0	0.5758

Compare expression of checked genes

Lus10036233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.