Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30970 390 / 6e-135 C2H2ZnF SUF4 suppressor of FRIGIDA4, zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038373 [exp] 660 / 0 AT1G30970 430 / 1e-150 suppressor of FRIGIDA4, zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G160700 [exp] 414 / 2e-143 AT1G30970 348 / 2e-117 suppressor of FRIGIDA4, zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2) Potri.003G074200 [exp] 414 / 3e-143 AT1G30970 392 / 8e-135 suppressor of FRIGIDA4, zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036234 pacid=23169456 polypeptide=Lus10036234 locus=Lus10036234.g ID=Lus10036234.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAGAAGAAGAGAGTTGCGTCCAAAGTTTGGTGCTACTACTGTGATCGCGAATTCGATGACGAGAAGATCCTTGTTCAGCATCAGAAGGCCA AACACTTCAAGTGCCATGTCTGCCACAAGAAGCTTTCCACCGCCGGCGGCATGACCATTCACGTACTCCAGGTCCACAAGGAGTCGGTCACCAAAGTTCC CAATGCAAAACCAGGAAGAGAAGCAACAGATATTGAAATATATGGGATGCAAGGAATTCCACCTGACGTCTTGGCTGCCCACTATGGAGAAGATGATGAA GAAACTCCCTCTAAAGCAGCCAAAGTAGATATATCTCGTCCTCCATATGCTGGAATAATTCCAGGATCGCTGCCTATTGGATATCCTCCACGACCTTTAG GTGCCATGCCCCAAGTTTACAGTTCCGGTATGCCTGTTCCACATGCTGGTTGGGGAGTTCCTCAGCGTCCTCAGACTTGGTACCCACAGAATCCTAATGT TTCAGTTCCTCCTCAAGCTCCTGTAGGATATGGTCACCAGCCATTGTTCCCTGTGCAAAATATGAGAGCTCCTGGCCTATCAGCTCCATCGCCTCTACTT CCTGCTCAGGTGGCTCCTCCTGGAATGCCTCCCTCCACTCCTCCAGTCCCTATGTCTCAACCACTATTTCCTGTTGTTAACAACAGTTTACAGCAAGGCC AACCATTTTCTTCTCCTTTACCGCCATCTAGTATCCCGTCTGGAGAACTAAAAGGGCAAGTGGATGTGCACTCAGGACTTAACGGTTCTGTCATGGCAGC TGGATACCAGCTCCCTTCAGGGCCAGGTCCAGTTTTGCCTAATTCGCATTCCTATGCCTCTGGTCCAAATACTGCCGGTCCATCTATTGGACCACCACCT GTAATTGCAAACAAAGCTAATGCTAACCAGCAAAGTGAAGTCTATTTAGTTTGGGATGACGAGGCCATGTCTATGGAGGAAAGAAGAATGTCTCTAACCA AGTATCAGGTGCATGATGAAACTAGCCAGCTTGCTGGAACAACTGAAGGATACTGCATTGATCCGAGTATGAGTTCAATCGACGCAGCTATTGACAGGAG GATACTGGAGAGCAGACTGGCTGGCCGAATGGCTTTCTAG
AA sequence Show only first row Show all	>Lus10036234 pacid=23169456 polypeptide=Lus10036234 locus=Lus10036234.g ID=Lus10036234.BGIv1.0 annot-version=v1.0 MGKKKKRVASKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMTIHVLQVHKESVTKVPNAKPGREATDIEIYGMQGIPPDVLAAHYGEDDE ETPSKAAKVDISRPPYAGIIPGSLPIGYPPRPLGAMPQVYSSGMPVPHAGWGVPQRPQTWYPQNPNVSVPPQAPVGYGHQPLFPVQNMRAPGLSAPSPLL PAQVAPPGMPPSTPPVPMSQPLFPVVNNSLQQGQPFSSPLPPSSIPSGELKGQVDVHSGLNGSVMAAGYQLPSGPGPVLPNSHSYASGPNTAGPSIGPPP VIANKANANQQSEVYLVWDDEAMSMEERRMSLTKYQVHDETSQLAGTTEGYCIDPSMSSIDAAIDRRILESRLAGRMAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Lus10036234 [exp]	0	1
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Lus10038373 [exp]	1.4	0.9341
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Lus10024952 [exp]	2.0	0.9128
AT4G21660			proline-rich spliceosome-assoc...		Lus10011207 [exp]	3.2	0.8608
AT5G02410		ALG10	homolog of yeast ALG10, DIE2/A...		Lus10003973 [exp]	4.9	0.8198
AT5G22120			unknown protein		Lus10008366 [exp]	6.0	0.8382
AT5G57160		ATLIG4	DNA ligase IV (.1)		Lus10020013 [exp]	7.1	0.7939
AT5G61900		CPN1, BON1	COPINE 1, BONZAI 1, Calcium-de...		Lus10043206 [exp]	8.5	0.8252
AT3G62310			RNA helicase family protein (....		Lus10005261 [exp]	9.2	0.8724
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10041725 [exp]	13.1	0.7993
AT1G20670			DNA-binding bromodomain-contai...		Lus10030739 [exp]	13.4	0.7665

Compare expression of checked genes

Lus10036234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.