Plant FIBer expression Database

Lus10036236 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G14050 655 / 0 Transducin/WD40 repeat-like superfamily protein (.1)
AT5G25150 55 / 1e-07 TAF5 TBP-associated factor 5 (.1)
AT1G11160 47 / 3e-05 Transducin/WD40 repeat-like superfamily protein (.1)
AT1G15440 44 / 0.0003 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
AT5G60940 42 / 0.0009 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038375
[exp]
928 / 0 AT5G14050 707 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Lus10024447
[exp]
45 / 0.0001 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G218600
[exp]
745 / 0 AT5G14050 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Potri.018G020200
[exp]
52 / 7e-07 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1)
Potri.006G263400
[exp]
49 / 6e-06 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0186 Beta_propeller PF00400 WD40 WD domain, G-beta repeat
Representative CDS sequence
>Lus10036236 pacid=23169398 polypeptide=Lus10036236 locus=Lus10036236.g ID=Lus10036236.BGIv1.0 annot-version=v1.0
ATGGGCGGTGGTGAAGAAGATGGCGATAGGAAGATGGGAACTGAGTTGGTGAAGAAAAGAAGGAAAGAAAGAAACGAGCAAACTGTTGTGGAGGAAGTCA
AGGAAATGAAGAAGCTTGAGAACTTCCTGTTTGGATCACTTTATTCTCCCGTGGAATTTGGAAAGGAGGAGGAGCAAGAGGTTGTAAACGATGATGGTTC
CGCTTTGTTTTTTGTTGATCGTTCGGCGAATAGTGAGTTGTTGCCTGAAGAGGATGACGAAGTGGATTATGAAGAAGACGATGAAGAAGGAGAAGCTAAC
GAAAGGAAAGCTGTTTGGGTTGATGACGAAGAGGAAGCTACTAAGATCAATATTTCGAGTGTTAATAGATTGAGGAAGCTGAGGAAGGAGGAGGAAGAGA
AAGTTATTTCTGGTTCGGAGTATGTCTCAAGGTTAAGGGTTCAGCATTCGAAGCTGAATCCCGGCACTGACTGGGCGAGGCTTGATCGGTCAGATTATGA
ACGTTACAGCGATGAATCTTCGGACGAAGATGATAATAATAACAATGCCGGTCCTGTCGAAGGTGGTGTTGATGAAATCCTTAGGAGTAATGAAGACCTT
GTGGTTAAGAGCCGAGTGAAATTGCTGCCCGGTCTTCTCGAGTACTCGAGACTTGTGGATGCGAATGCTGAAGATCCTTCAAGTGGTCCAATTAATTCGG
TCGAGTTCCATCGAAATGGTCAGCTGTTACTCACTGCTGGACTGGATAAAAGGATTCGGTTTTTCCAGATCGATGGGAAGCGTAATACAAAGATACAAAG
CATCTTCATCGACGATTGTCCGATCCGAAAAGCCTCGTTCTTGCCTGATGGATCGCAGGTGATCATTTCAGGAAGAAGGAAGTTCTTCTACAGCTTCGAT
TTGGTGAAGGCCAAAGTCGATAAAATCGGACCCTTGGTTGGCAGGGAAGAGAAAAGCTTGGAACTTTTTGAAGTCTCACCCGATTCAAAAACCATTGCCT
TTGTGGGTAACGAAGGGTATATATTACTGGTATCAACAAAGACTAAGGAACTCATTGGAACTCTGAAGATGAATGGTACAGCTCGATCGTTAGCTTTCTC
TGCTGATGGACAGCAGCTTATAAGCCATGGTGGAGATGGCCAGGTTTATCACTGGGATCTTAGAACGAGGACATGTATTCACAAGGCAGTCGACGAAGGT
TGCATCAATGGCACTGCACTAACCACTTCCCCAGTGGGGAACTTCTTTGCGGCCGGTTCAGACAGCGGGATTGTGAATGTGTACAATAGAGAGGAGTTCT
TAGGTGGGAAGAGGAAACCAGTGAAGGCGATAGAGAACTTGACAACGAAAGTAGACTTTATGAAGTTCAATAAGGATGCTCAGATACTGGCGATATGTTC
GACCATGGGGAAGAATGCTATGAAGTTGATACATGTACCTTCGTTCACAGCTTTCTCGAACTGGCCTCCTCCGAACAAGACGATACACTATCCTCGCTGC
TTGGACTTCAGTCCCGGTGGAGGTTTCATGGCCGTGGGGAACGCTGCTGGTAAAGTATTGCTTTACAAGTTGCATCACTACGATCATGCCTAA
AA sequence
>Lus10036236 pacid=23169398 polypeptide=Lus10036236 locus=Lus10036236.g ID=Lus10036236.BGIv1.0 annot-version=v1.0
MGGGEEDGDRKMGTELVKKRRKERNEQTVVEEVKEMKKLENFLFGSLYSPVEFGKEEEQEVVNDDGSALFFVDRSANSELLPEEDDEVDYEEDDEEGEAN
ERKAVWVDDEEEATKINISSVNRLRKLRKEEEEKVISGSEYVSRLRVQHSKLNPGTDWARLDRSDYERYSDESSDEDDNNNNAGPVEGGVDEILRSNEDL
VVKSRVKLLPGLLEYSRLVDANAEDPSSGPINSVEFHRNGQLLLTAGLDKRIRFFQIDGKRNTKIQSIFIDDCPIRKASFLPDGSQVIISGRRKFFYSFD
LVKAKVDKIGPLVGREEKSLELFEVSPDSKTIAFVGNEGYILLVSTKTKELIGTLKMNGTARSLAFSADGQQLISHGGDGQVYHWDLRTRTCIHKAVDEG
CINGTALTTSPVGNFFAAGSDSGIVNVYNREEFLGGKRKPVKAIENLTTKVDFMKFNKDAQILAICSTMGKNAMKLIHVPSFTAFSNWPPPNKTIHYPRC
LDFSPGGGFMAVGNAAGKVLLYKLHHYDHA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G14050 Transducin/WD40 repeat-like su... Lus10036236
[exp]
0 1
AT5G14050 Transducin/WD40 repeat-like su... Lus10038375
[exp]
3.3 0.9365
AT2G47990 SWA1, EDA13, ED... SLOW WALKER1, EMBRYO SAC DEVEL... Lus10015340
[exp]
6.6 0.9232
AT4G32430 Pentatricopeptide repeat (PPR)... Lus10017032
[exp]
6.9 0.9078
AT4G15770 RNA binding (.1) Lus10037509
[exp]
7.1 0.9213
AT5G20600 unknown protein Lus10011961
[exp]
7.7 0.9023
AT3G09630 Ribosomal protein L4/L1 family... Lus10014431
[exp]
8.0 0.9325
AT3G51010 unknown protein Lus10042347
[exp]
8.8 0.9175
AT5G64670 Ribosomal protein L18e/L15 sup... Lus10023078
[exp]
9.3 0.9300
AT2G01390 EMB3111 EMBRYO DEFECTIVE 3111, Tetratr... Lus10028525
[exp]
13.4 0.8362
AT2G03880 REME1 required for efficiency of mit... Lus10001617
[exp]
18.2 0.8960

Lus10036236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.