Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44740 767 / 0 POLH Y-family DNA polymerase H (.1.2) AT1G49980 117 / 3e-27 DNA/RNA polymerases superfamily protein (.1) AT5G44750 117 / 8e-27 ATREV1, REV1 ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, DNA-directed DNA polymerases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038376 [exp] 261 / 2e-81 AT5G44740 141 / 1e-37 Y-family DNA polymerase H (.1.2) Lus10013870 [exp] 111 / 4e-25 AT5G44750 1025 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, DNA-directed DNA polymerases (.1.2) Lus10020986 [exp] 99 / 4e-21 AT1G49980 768 / 0.0 DNA/RNA polymerases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G152600 [exp] 809 / 0 AT5G44740 775 / 0.0 Y-family DNA polymerase H (.1.2) Potri.009G094400 [exp] 119 / 1e-27 AT5G44750 1071 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, DNA-directed DNA polymerases (.1.2) Potri.001G293600 [exp] 108 / 3e-24 AT1G49980 826 / 0.0 DNA/RNA polymerases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00817 [flax] [poplar] IMS impB/mucB/samB family PF11799 [flax] [poplar] IMS_C impB/mucB/samB family C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10036237 pacid=23169315 polypeptide=Lus10036237 locus=Lus10036237.g ID=Lus10036237.BGIv1.0 annot-version=v1.0 ATGCCGGTGGCGCGACCGGAATCGTCCCATCCAAGAATCATAGCCCACGTCGACATGGATTGCTTCTACGTCCAAGTGGAGCAGAGGAAGCAACCGGAGT TGAGAGGTTTACCTGCCGCAGTGGTGCAGTACAACGAGTGGAAAGGCGGCGGGTTGATTGCTGTTAGCTACGAGGCCCGTGGATTTGGAGTCAAGCGTTC GATGCGAGGTGATGAAGCAAAACAAGTTTGTCCTCAAATTCATCTGGTTCAAGTCCCTGTAGCTCGCGGTAAGGCAGACCTAAGTGTCTACCGTAATGCT GGTTCAGAGGTGGTTTCTATTCTCGCGAGGAAGGGCCGATGCGAGAGGGCTTCAATCGATGAAGTATACCTTGACCTTACTGATACTGCTGAGGCTATGA TGAGAGTAAACCCTCCAGAGAATTTGGAAACAGTACCTGAGGAAGTTCTCAAATCCCATGTTATAGGGCTCCAAAATCAGGATGGAATTGATGGGAAAGA AAATGTGAGGAGATGGCTTTGCAACGGTGCTGCCGATCATCGAGACAAACTGTTAGCTTGTGGAGCTATTATTGTTGCAGAACTTAGAATGCAAGTCCTT CAGGAGACAGAGTTCACTTGTTCTGCTGGCGTTGCTCATAATAAGATGCTAGCAAAACTTGCAAGTGCTATGAATAAACCTGCACAACAAACTGTTGTCC CCTTGTCATATGTAGATGGGATGCTCCATTCATTCCCAATAAAGAAAATGAAACAGCTTGGTGGAAAGCTGGGAGCTTCATTACAAAACGAGCTCGGTGT GAACACTGTTGGAGATCTATTGCAGTTTTCCGAAGAGAAATTACAAGATCTTTATGGTGTAAATACTGGTACTTGGTTGTGGAACATTGCCAGAGGAATC AACGGGGAAGAAGTTCAGGAGCGGCTTCTTCCCAAGAGCCATAGATCTGGAAAGTCGTTTCCTTGTCCTCGGGCTTTAAAGACGATTGTGACTGTTCAAC ACTGGCTCAACCAACTTTGTGACGAACTTAGTGAACGTATTTGGTGCGATATGGAAGAAAATAAGCGTATCGCACATACTCTTACTCTCCATGCTACAGC ATATGTGTTGACCTTATTTCGAGCTCTTCTGCAGTCAAATGACAGAGATTCTCATAGGAAGTTTCCTTCAAAATCTTGTCCATTGAGGTACGGAACTGCC AAGATTCAAGAGGATGCATTTAACCTATTTCAAGCTGGATTACGTGAATACCTGAGCTCTCATGGGGCGAGTACTCAAGGAAGTTCTCATCATGCATGGG GAATAACAGGTCTATCAGTTTCAGCAAGCAAAATTATGGACATACCTTCTGGAACATGCTCAATCATGAAATACTTTGCTGGCAAGCAAACATCTGATTC TCCTACAAAGCAAGTGGCCAGTAACTTCATCGACGAAACCACTCCATCATCATCCTCGGGCAGCAAGAATTATTCAGAATTGGACTTTTGTGAGAGGCAA GTGGAGCTTAACGCCAGTCATTTGGATAATCAAGAACAAATGATAACTATGCAGGACGATAAGAATGTGACTTTGCTGGGGCATGAAGAGGACAGCTCAA CTAGTGAAGCTTCAAGACCAGCGCCCCTGGCCCCAAGCGATGCTTGTTCGGGGAAAAACGATAAAAACCCACAAGAATTAGCTAGCAAAGATGCTAGACA CCTGTCCAACGCAGCATATTCAAAACGTAAAGAACAGAAAAAGAATGACTCAAAAGGCCAGGGAACAATCTTGAGGTTCTTAAAGAGCAAAGATCCCTGC ATTTCTTCGGAGCAGGAAAGTGTTAGTGCGACTGGAGATCAAAATGCAGGCAGAGGAGCAACATGGAAGTACAGGATTGACGAGATTGACGAATCTGTGA TCGCAGAGTTACCAATGGAAATTCAAGCCGAAATAAACGCCTGGATCCGACCCCAAAAAAGGGCCAATATAGTCAGGGGAGGTGCTACTATTGCCCACTA TTTCTCAGCAAGCCAGAAGTAG
AA sequence Show only first row Show all	>Lus10036237 pacid=23169315 polypeptide=Lus10036237 locus=Lus10036237.g ID=Lus10036237.BGIv1.0 annot-version=v1.0 MPVARPESSHPRIIAHVDMDCFYVQVEQRKQPELRGLPAAVVQYNEWKGGGLIAVSYEARGFGVKRSMRGDEAKQVCPQIHLVQVPVARGKADLSVYRNA GSEVVSILARKGRCERASIDEVYLDLTDTAEAMMRVNPPENLETVPEEVLKSHVIGLQNQDGIDGKENVRRWLCNGAADHRDKLLACGAIIVAELRMQVL QETEFTCSAGVAHNKMLAKLASAMNKPAQQTVVPLSYVDGMLHSFPIKKMKQLGGKLGASLQNELGVNTVGDLLQFSEEKLQDLYGVNTGTWLWNIARGI NGEEVQERLLPKSHRSGKSFPCPRALKTIVTVQHWLNQLCDELSERIWCDMEENKRIAHTLTLHATAYVLTLFRALLQSNDRDSHRKFPSKSCPLRYGTA KIQEDAFNLFQAGLREYLSSHGASTQGSSHHAWGITGLSVSASKIMDIPSGTCSIMKYFAGKQTSDSPTKQVASNFIDETTPSSSSGSKNYSELDFCERQ VELNASHLDNQEQMITMQDDKNVTLLGHEEDSSTSEASRPAPLAPSDACSGKNDKNPQELASKDARHLSNAAYSKRKEQKKNDSKGQGTILRFLKSKDPC ISSEQESVSATGDQNAGRGATWKYRIDEIDESVIAELPMEIQAEINAWIRPQKRANIVRGGATIAHYFSASQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44740		POLH	Y-family DNA polymerase H (.1....		Lus10036237 [exp]	0	1
AT2G37290			Ypt/Rab-GAP domain of gyp1p su...		Lus10014020 [exp]	2.0	0.8030
AT4G30870		ATMUS81	ARABIDOPSIS THALIANA MMS AND U...		Lus10039566 [exp]	2.8	0.8088
AT5G44740		POLH	Y-family DNA polymerase H (.1....		Lus10038376 [exp]	4.0	0.7264
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10017479 [exp]	16.7	0.7264
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001836 [exp]	17.1	0.7518
AT1G02270			Calcium-binding endonuclease/e...		Lus10005145 [exp]	17.1	0.7115
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10039919 [exp]	17.4	0.6656
AT5G21080			Uncharacterized protein (.1)		Lus10016400 [exp]	23.0	0.7254
AT5G50340			ATP-dependent peptidases;nucle...		Lus10025843 [exp]	23.3	0.7351
AT3G24820			BSD domain-containing protein ...		Lus10025929 [exp]	23.7	0.6640

Compare expression of checked genes

Lus10036237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.