Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20300 159 / 3e-45 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT1G55340 93 / 5e-22 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT3G03880 79 / 5e-17 Protein of unknown function (DUF1639) (.1) AT3G60410 61 / 3e-10 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) AT1G25370 59 / 8e-10 Protein of unknown function (DUF1639) (.1) AT4G17440 47 / 6e-06 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT1G68340 46 / 2e-05 Protein of unknown function (DUF1639) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038379 [exp] 241 / 4e-78 AT4G20300 188 / 1e-58 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10010650 [exp] 87 / 1e-20 AT1G55340 148 / 3e-46 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10010312 [exp] 84 / 7e-19 AT1G55340 254 / 1e-86 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10013616 [exp] 57 / 1e-10 AT1G55340 111 / 1e-32 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10013412 [exp] 54 / 1e-08 AT1G55340 165 / 1e-52 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10004378 [exp] 56 / 2e-08 AT4G17440 96 / 4e-23 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10010984 [exp] 50 / 2e-06 AT3G60410 89 / 3e-20 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Lus10035144 [exp] 45 / 6e-05 AT1G25370 87 / 2e-20 Protein of unknown function (DUF1639) (.1) Lus10040176 [exp] 41 / 0.0006 AT3G60410 76 / 1e-16 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G073400 [exp] 323 / 3e-108 AT4G20300 226 / 3e-71 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.003G157500 [exp] 316 / 2e-105 AT4G20300 201 / 2e-61 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.001G004000 [exp] 94 / 3e-22 AT1G55340 268 / 4e-92 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.003G221000 [exp] 91 / 5e-21 AT1G55340 261 / 3e-89 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.013G057600 [exp] 91 / 8e-21 AT1G55340 212 / 1e-69 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.019G035300 [exp] 89 / 2e-20 AT1G55340 232 / 9e-78 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.018G059200 [exp] 79 / 2e-16 AT1G55340 133 / 3e-38 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.006G233100 [exp] 76 / 2e-15 AT1G55340 130 / 9e-37 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.010G122700 [exp] 56 / 2e-08 AT1G25370 110 / 1e-28 Protein of unknown function (DUF1639) (.1) Potri.014G044800 [exp] 55 / 4e-08 AT3G60410 105 / 6e-26 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07797 [flax] [poplar] DUF1639 Protein of unknown function (DUF1639)
Representative CDS sequence Show only first row Show all	>Lus10036240 pacid=23169458 polypeptide=Lus10036240 locus=Lus10036240.g ID=Lus10036240.BGIv1.0 annot-version=v1.0 ATGATGAGTGATTTCTCTGACCGATCCAATTCTGGAAATGCTTGCAGATACCAGAGAGTAAGCCCAGATTATCTCCCTTTACCTAACAACAAGAAGCCCA GCACCGTCGGCACGAGCGGCGGCAGCGAGAACGGCCGGTCAAACCCCAACGGTGTCAGCTCGTCATCAGCAGGTTACGAGATCAAAGGATTCAGATACAG ATCGCCGTCCAGAAACCAAGATTACCACCACCACACCAATGGCGCCGCCGCAAATGTCGGGAGCCCTTTACGCTCAGACAACGTCCAGAGTAACAGCCAT AAACGAGACACGACGAATCTCAGCCGTGACGGCAGCGGAGACATGCTGTTGCAATGGGGCCAGAAGAAGAGAGCGAGGGTATCCCGATCGGAGATCCGGG CTCTAGCCGATGAATCCTCATCTTCCGGTCAAGGAAGGCAGCCCATCATCACCGGCAAGGTTCCTTCCTTCAGGAGATTAGACGACAACAGCAAGCTCCA AGTGCCGTCTATGCCGCCTCCGCCTCCTCCGGCCGCACCGCTAACAACCAACGGTAGAGGCGGAAGCCTCAGAAAAGAAACCGCCGCTCTCCTCTCTCAT AGGAATTTGGAAAAGCGATCTGCTGGGAATGGGTCCCCATCACGTACTGCTGCCGGTGGTGGCGGTGGAGGTGGGAACGGGAGCCGTGTGGTTTCCAGAT CTACGGCGGGGAAGCGATCTTCCCCTCCAACTCCTGATAAAGTTGATAAGAAGCAGCAACAGCAAACCACTTCTCGTTCTGTTAGGGACGACAAATCCAA TGGATCGGTAGTTGCCTCCCTAGTGCACCATCACCAAACTGCTGCTGATCATCATCATCACCACGTTGAGTCAACATATTGGCAATCAGAGGTTGCTGCT AATAATAATAATACAGCAGCAGCTCCAGTGGAGAGAGTGGAGTGGCCAAGGATCTTCCTCTCCTTGTCGAGGAAGGAGAAAGAGGATGATTTCCTGGCGA TGAAAGGTACTAAGCTGCCTCAACGGCCCAAGAAGAGGGCTAAGAACGTTGATAGAGGCCTTCAGTACTGCTTTCCAGGGATGTGGCTGTCTGATTTGAC AAAGAGTAGGTATGAAGTAAGAGAGAAGAAGAGTGTGAAGAAGCAGCAGCAGAAGAGAAGAGGATTGAAGGGGATGGAGAGCATGGACAACAACAGTGAA TCTGAGTGA
AA sequence Show only first row Show all	>Lus10036240 pacid=23169458 polypeptide=Lus10036240 locus=Lus10036240.g ID=Lus10036240.BGIv1.0 annot-version=v1.0 MMSDFSDRSNSGNACRYQRVSPDYLPLPNNKKPSTVGTSGGSENGRSNPNGVSSSSAGYEIKGFRYRSPSRNQDYHHHTNGAAANVGSPLRSDNVQSNSH KRDTTNLSRDGSGDMLLQWGQKKRARVSRSEIRALADESSSSGQGRQPIITGKVPSFRRLDDNSKLQVPSMPPPPPPAAPLTTNGRGGSLRKETAALLSH RNLEKRSAGNGSPSRTAAGGGGGGGNGSRVVSRSTAGKRSSPPTPDKVDKKQQQQTTSRSVRDDKSNGSVVASLVHHHQTAADHHHHHVESTYWQSEVAA NNNNTAAAPVERVEWPRIFLSLSRKEKEDDFLAMKGTKLPQRPKKRAKNVDRGLQYCFPGMWLSDLTKSRYEVREKKSVKKQQQKRRGLKGMESMDNNSE SE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20300			Protein of unknown function (D...		Lus10036240 [exp]	0	1
AT1G76850		SEC5A	exocyst complex component sec5...		Lus10040488 [exp]	3.0	0.8363
AT2G38610			RNA-binding KH domain-containi...		Lus10003241 [exp]	6.0	0.7345
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Lus10007924 [exp]	8.2	0.6905
AT3G12590			unknown protein		Lus10001698 [exp]	9.3	0.7954
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10026626 [exp]	11.2	0.7657
AT5G19670			Exostosin family protein (.1)		Lus10012973 [exp]	12.3	0.7855
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10034707 [exp]	13.2	0.7225
AT1G48540			Outer arm dynein light chain 1...		Lus10017994 [exp]	13.6	0.7869
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10004490 [exp]	18.3	0.7657
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10025464 [exp]	19.8	0.7038

Compare expression of checked genes

Lus10036240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.