Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20280 190 / 3e-60 TAF11 TBP-associated factor 11 (.1) AT1G20000 152 / 1e-45 TAF11b TBP-associated factor 11B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038380 [exp] 234 / 3e-77 AT4G20280 145 / 1e-43 TBP-associated factor 11 (.1) Lus10027643 [exp] 78 / 1e-16 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G073500 [exp] 232 / 1e-76 AT4G20280 219 / 2e-72 TBP-associated factor 11 (.1) Potri.003G157450 [exp] 73 / 1e-16 AT4G20280 87 / 4e-23 TBP-associated factor 11 (.1) Potri.001G405600 [exp] 70 / 1e-14 ND / Potri.011G127800 [exp] 70 / 3e-14 ND / Potri.003G157401 [exp] 47 / 1e-06 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF04719 [flax] [poplar] TAFII28 hTAFII28-like protein conserved region
Representative CDS sequence Show only first row Show all	>Lus10036241 pacid=23169454 polypeptide=Lus10036241 locus=Lus10036241.g ID=Lus10036241.BGIv1.0 annot-version=v1.0 ATGAATCAGCTAAAGGATCCCTTCGAGGCGGCTTACGAAGAGCAGGAGGATTCTCCCCCGGATTCGCCGCTTGCCACCGATGAGTTGGACGCCGGACCAT CGTCTCCTCGCCCTCCTCCTGCAGCTCCCGGTTCTCAGGGCGCCGTAACCGTCGAAGAGGACGATGAGACTACCAACGGCGATCTCCGTCTCTCCGATCC TTCGTCTTCGGCTCCACCCTCGTCCTCTGCTAGAAATAAGGGCAAGATGAAAGAGGAAGACGAGGATGAAGAGGAAGACAACATGGAAGTTGAGCTGGCT AAGCTCCGTTCCACTGCGGACCCTGATAAGATGGCCAAGATGCAAACTATTCTTTCACAGTTTACTGAGGACCAGATGAGTAGATACGAGTCATTCCGGA GATCTGCCCTCCAGAAGCCTAACATGAAAAGGTTGCTGGTAAGCATTACAGGGACACAAAAGATTTCGCTGCAAGTGAATATTGTTGTTTGTGGGATTGC GAAAATGTTTGTTGGTGAAGTTGTTGAAACAGCTAGAATTGTTATGGCAGAAAGAAGAGAATCTGGACCAATCAGGCCTTGTCATCTCAGAGAAGCATAT AGACGACTAAAGCTTGAGGCAGCAGTGAGTTACCAGAAGGAAGAGTTTGTGGAGGTTGACGAGAGCCGGCATCGGATTGGGGTGGAGATAGTGGAAGGAG GTCACCTTGAGCATTATGGCTTTTCTTTCTACAAGACAACTCTCCAACTCAGTACTAGTGGGGTGGTGACGGTGGTTGATGTGGAGATAAGTCATGAATG TGAGAGGGAAGTTTGA
AA sequence Show only first row Show all	>Lus10036241 pacid=23169454 polypeptide=Lus10036241 locus=Lus10036241.g ID=Lus10036241.BGIv1.0 annot-version=v1.0 MNQLKDPFEAAYEEQEDSPPDSPLATDELDAGPSSPRPPPAAPGSQGAVTVEEDDETTNGDLRLSDPSSSAPPSSSARNKGKMKEEDEDEEEDNMEVELA KLRSTADPDKMAKMQTILSQFTEDQMSRYESFRRSALQKPNMKRLLVSITGTQKISLQVNIVVCGIAKMFVGEVVETARIVMAERRESGPIRPCHLREAY RRLKLEAAVSYQKEEFVEVDESRHRIGVEIVEGGHLEHYGFSFYKTTLQLSTSGVVTVVDVEISHECEREV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20280		TAF11	TBP-associated factor 11 (.1)		Lus10036241 [exp]	0	1
AT5G35080			unknown protein		Lus10008819 [exp]	5.4	0.7979
AT3G56740			Ubiquitin-associated (UBA) pro...		Lus10027269 [exp]	5.7	0.7680
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10014899 [exp]	5.9	0.7515
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028753 [exp]	6.3	0.7603
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10031084 [exp]	11.2	0.7425
AT5G65000			Nucleotide-sugar transporter f...		Lus10026182 [exp]	14.5	0.7265
AT3G06170			Serinc-domain containing serin...		Lus10034023 [exp]	15.0	0.7674
AT1G53750		RPT1A	regulatory particle triple-A 1...		Lus10031815 [exp]	16.2	0.7304
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Lus10024466 [exp]	17.3	0.7229
AT5G18610			Protein kinase superfamily pro...		Lus10040350 [exp]	19.3	0.7163

Compare expression of checked genes

Lus10036241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.