Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20270 1155 / 0 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 1021 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 1009 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G75820 836 / 0 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G61480 612 / 0 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT4G28650 583 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G24240 569 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 562 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 553 / 3e-180 Leucine-rich repeat protein kinase family protein (.1) AT5G48940 553 / 6e-180 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038382 [exp] 1026 / 0 AT4G20270 734 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10037358 [exp] 1011 / 0 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 999 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10039641 [exp] 989 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011576 [exp] 967 / 0 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10035783 [exp] 843 / 0 AT5G65700 857 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10013562 [exp] 820 / 0 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10017267 [exp] 819 / 0 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038381 [exp] 708 / 0 AT4G20270 457 / 5e-152 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G073600 [exp] 1342 / 0 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G157300 [exp] 1333 / 0 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G009200 [exp] 1003 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.004G223900 [exp] 1002 / 0 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.005G241500 [exp] 846 / 0 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G019900 [exp] 842 / 0 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G107600 [exp] 619 / 0 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.002G256500 [exp] 606 / 0 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.013G048800 [exp] 604 / 0 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G021700 [exp] 604 / 0 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10036242 pacid=23169361 polypeptide=Lus10036242 locus=Lus10036242.g ID=Lus10036242.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCTTGTCACCTCACTCTGCCCTTCATTCCGATTCTCCTTCTCCTTCTTCTTCTTCTTCTTCAAAACAATGGCTGCCACTCGATTTCCTCTC ACGAACTCTACCTGAAAAGACAGGCTTCAATCCTAGTCACAATCAAGCAGTCCTTCACATCCCACAATCCTTCCCTTGATTCATGGAGCCTCTCAAATTT CTCCTCCCTCTGTTCCGGAAGCTGGGCCGGAATCCAATGCGATAACGAATCGAATCGATCGGTGGTCTCTGTAGACATCTCGAATTCCAACGTCTCGGCT GGAATCCTCTCCCCTGCATTCTCCGAGCTACAAACTTTATCAACGCTCTCACTCGCCGGTAACAGCTTCTCCGGCGAGTTACCCGCGGCGGAGTTCTTTC ACAAGCTCCCCATGCTGAAGTTCCTCAACATCTCTGGAAACCTCTTCTCCGGTGAAATCAACAAATGGGATTTCTCAAAGATGCAATCTTTGTCGGTGTT GGATGTCTACGACAACAATTTCAACGGCTCACTCCCCACCGCAGGAATCACTCTGCTTCCGAATTTAACCCATTTGGATTTCGGCGGGAACTACTTCACC GGAGAAATCCCTCCCAGCTACGGAGATATTCGTCAGCTGGTTTACCTCTCCCTTAAGGGGAACGATCTCCGTGGGAAAATTCCGGCGGAGATCGGAAACC TAACCAATCTCCGGCAGCTTTATCTAGGGTATTTCAATCAATTCAGCGGCGGAATCCCGCCGGAGATCGGGAATCTGATCAGCTTGGTCCATCTTGACCT CGCCAATTGCAAATTACGAGGTTCAATTCCTCCGGAATTGGGGAAATTGGAGGAATTGGACACTCTATTCTTACAAACCAACGAGTTAACCGGTTTGATT CCTCCCCAATTGGGGAATCTCAGCAACCTCAAAACCCTAGATCTCTCCAACAATGTCCTGACAGGTGGGATTCCAGTCGAGTTCGCGGGTCTCCGCGAAC TCACCCTTTTGAATCTTTTCATCAACAGGTTACACGGCGAGATCCCGCCATTCGTCGCAGACCTTCAGGACTTGGAGGTCCTGAAGCTCTGGCATAACAA CTTCACCGGAGCGATCCCGGAGAAGCTCGGCGAAAATGGGAGGTTGATCGAACTTGATCTTTCGAGCAACAAGCTGACAGGAAGCATCCCGCAATCACTG TGCTTGGGGAAGAAGCTCAAGGTTCTGATTCTGAAGATCAATTTCTTGTTCGGATCGATACCTGACGATCTCGGAAACTGCGAGACTCTGTTGAGAGTTC GGTTGGGTAAGAATTACCTGACAGGGAAAATTCCTGATGGGTTGCTTTACCTGCCGGAAATGTCACTTCTGGAGCTGCAGAGTAATTACTTAACCGGTCC GGTTTCGGAGACGACGAATAGTAAAGTGGGTGGTTCGAAACTGGAGCAGCTGAATCTTTCCGAGAATCGGTTAACCGGTCCGATGCCTGGTTCGATTGGG AACCTGTCTAGCTTGCAGATTCTGCTTCTGAATGGAAACCAATTCACAGGTGAAATTCCTTCTCAAATTGGTGAATTGAAGAGTGTGCTGACATTGGATA TGAGTAGGAACAATTTCTCTGGGAATATACCTCCAAGCATTGGGAGTTGCTTGATGTTAACCTACTTGGATTTGAGCCATAACCAGCTATCCGGACCGAT TCCGATTCAGGTGGCTCAGATTCACATCCTCGATTACTTCAATGTGTCATGGAACAACTTGAACAACAGCCTTCCAAGGGAAATCGGGTCGATGAAGAGC CTAACATCAGCAGATTTCTCCCACAATAACTTCTCAGGTTCGATCCCCGAATTCGGTCAGTACTCCTTCTTTAACTCGACGTCCTTCGTGGGCAACCCTC TTCTTGTGGGTTCCGTTCTGAATAACCAATCCGGTTCATCACTCGAGTTTCATACCCACAATGGTTCGACCGAGTCGAAAGTCTCAGGAAAATTCAAACT CCTTTTCGCTCTAGGACTACTATTATGTTCAATGGTTTTCGTTGTCTTGGCAATCATCAAGGCACGGAAATGGCGAAAGGGTTCTAGCAAATGGAGGTTA ACCGCATTCCAAAAGCTCGAATTCACTTGCCAGGACGTCCTGGAATGTGTCAAGGACAACAATGTGATAGGCAGGGGAGGGGCCGGAACGGTTTACAAAG GAACAATGGCCGACGGAGAAAATGTAGCAGTGAAAAAGTTGCTCGGAATAAACAAAGGCTCGTCGTCCCACCACGACAATGGTCTAGCAGCCGAGATACA AACGCTAGGCCGGATCAGACACAGGAACATCGTGAGACTGCTGGCGTTCTGCTCGAACAAAGACACGAACTTTCTAGTTTACGAGTACATGCCGAACGGG AGCCTTGGAGAAGTTCTCCACGGGAAAAGAGGAGGGTTTCTGAAGTGGGGAACTAGGCTCAAAATAGCGATCGAAGCCGCGAAAGGGTTGTGTTACTTGC ACCACGATTGTTCGCCTCTCATCGTTCATAGAGATGTCAAGTCGAACAACATACTGCTGAACTCGGAGTTCGAGGCTCATGTTGCCGATTTCGGACTGGC CAAGTTCCTGCAGGATTCCGGGAATTCGGAGTGCATGTCAGCAATTGCAGGCTCCTACGGCTACATTGCGCCAGAGTATGCATACACGTTGAAAGTGGAC GAGAAGAGCGATGTGTACAGTTTCGGGGTGGTGTTGCTAGAGTTGATAACCGGAAGGAAACCGGTGGGGAATTTCGAGGAAGAAGGCCTGGACATCGTGC AGTGGAGTAGGATCCACACGAATTTCGTCAAGGAGAGAGTTGTGAAGATTTTGGACGAGAGGCTAACGGAGGAGATACCTTTGAGTGAAGCGACGCAAGT GTTCTTTGTGGCGATGTTGTGCGTGCAAGAACACAGTGTGGAGAGGCCAACCATGAGAGAAGTTGTTCAAATGCTTGCCCAAGCCAAACAACCCCTTACT TTCCAGATTCAGTAG
AA sequence Show only first row Show all	>Lus10036242 pacid=23169361 polypeptide=Lus10036242 locus=Lus10036242.g ID=Lus10036242.BGIv1.0 annot-version=v1.0 MAASCHLTLPFIPILLLLLLLLLQNNGCHSISSHELYLKRQASILVTIKQSFTSHNPSLDSWSLSNFSSLCSGSWAGIQCDNESNRSVVSVDISNSNVSA GILSPAFSELQTLSTLSLAGNSFSGELPAAEFFHKLPMLKFLNISGNLFSGEINKWDFSKMQSLSVLDVYDNNFNGSLPTAGITLLPNLTHLDFGGNYFT GEIPPSYGDIRQLVYLSLKGNDLRGKIPAEIGNLTNLRQLYLGYFNQFSGGIPPEIGNLISLVHLDLANCKLRGSIPPELGKLEELDTLFLQTNELTGLI PPQLGNLSNLKTLDLSNNVLTGGIPVEFAGLRELTLLNLFINRLHGEIPPFVADLQDLEVLKLWHNNFTGAIPEKLGENGRLIELDLSSNKLTGSIPQSL CLGKKLKVLILKINFLFGSIPDDLGNCETLLRVRLGKNYLTGKIPDGLLYLPEMSLLELQSNYLTGPVSETTNSKVGGSKLEQLNLSENRLTGPMPGSIG NLSSLQILLLNGNQFTGEIPSQIGELKSVLTLDMSRNNFSGNIPPSIGSCLMLTYLDLSHNQLSGPIPIQVAQIHILDYFNVSWNNLNNSLPREIGSMKS LTSADFSHNNFSGSIPEFGQYSFFNSTSFVGNPLLVGSVLNNQSGSSLEFHTHNGSTESKVSGKFKLLFALGLLLCSMVFVVLAIIKARKWRKGSSKWRL TAFQKLEFTCQDVLECVKDNNVIGRGGAGTVYKGTMADGENVAVKKLLGINKGSSSHHDNGLAAEIQTLGRIRHRNIVRLLAFCSNKDTNFLVYEYMPNG SLGEVLHGKRGGFLKWGTRLKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLNSEFEAHVADFGLAKFLQDSGNSECMSAIAGSYGYIAPEYAYTLKVD EKSDVYSFGVVLLELITGRKPVGNFEEEGLDIVQWSRIHTNFVKERVVKILDERLTEEIPLSEATQVFFVAMLCVQEHSVERPTMREVVQMLAQAKQPLT FQIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10036242 [exp]	0	1
AT3G52490			Double Clp-N motif-containing ...		Lus10028849 [exp]	1.4	0.9394
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10001133 [exp]	2.0	0.9247
AT1G67720			Leucine-rich repeat protein ki...		Lus10036935 [exp]	2.0	0.9369
AT1G67720			Leucine-rich repeat protein ki...		Lus10037051 [exp]	3.0	0.9356
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10005228 [exp]	4.5	0.9227
AT5G17980			C2 calcium/lipid-binding plant...		Lus10010658 [exp]	4.6	0.9049
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10035784 [exp]	6.5	0.9164
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10034567 [exp]	7.5	0.9010
AT5G58300			Leucine-rich repeat protein ki...		Lus10034258 [exp]	8.1	0.8898
AT3G59100		ATGSL11	glucan synthase-like 11 (.1)		Lus10020751 [exp]	8.2	0.8840

Compare expression of checked genes

Lus10036242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.