Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20260 142 / 1e-42 ATPCAP1 ARABIDOPSIS THALIANA PLASMA-MEMBRANE ASSOCIATED CATION-BINDING PROTEIN 1, plasma-membrane associated cation-binding protein 1 (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038383 [exp] 213 / 2e-69 AT4G20260 166 / 3e-52 ARABIDOPSIS THALIANA PLASMA-MEMBRANE ASSOCIATED CATION-BINDING PROTEIN 1, plasma-membrane associated cation-binding protein 1 (.1.2.3.4.5.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G157100 [exp] 177 / 6e-56 AT4G20260 145 / 3e-44 ARABIDOPSIS THALIANA PLASMA-MEMBRANE ASSOCIATED CATION-BINDING PROTEIN 1, plasma-membrane associated cation-binding protein 1 (.1.2.3.4.5.6) Potri.001G073900 [exp] 166 / 1e-51 AT4G20260 143 / 2e-43 ARABIDOPSIS THALIANA PLASMA-MEMBRANE ASSOCIATED CATION-BINDING PROTEIN 1, plasma-membrane associated cation-binding protein 1 (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05558 [flax] [poplar] DREPP DREPP plasma membrane polypeptide
Representative CDS sequence Show only first row Show all	>Lus10036243 pacid=23169418 polypeptide=Lus10036243 locus=Lus10036243.g ID=Lus10036243.BGIv1.0 annot-version=v1.0 ATGGGTTACTGGAAATCAAAGGTTTTGCCCAAGATCAAGAAGGTGTTCGAGAAGGACACTGCCAAGAAGGCTGCTGCTGCTGAAGCTACCAAGACTTTTG ATGCTTCTAAGGAAGAAATCACTAAGGAGTTTGATGACAAGAAGACTGAACTCCAGCCTAAGGTCCTTGAAGTTTACCAAGCTTCCTCTGCTGAAATCAA GACGGTGGTTAAGGGACCAACGGAGGCAGGACTTAAGAAGCACTCAACTTCCGTTGTCAAGTTCTTTGAAGAGCTTGTCAAAATAGAGTTCCCGGGATCA AAGGTGGTGTCCGAAGCATGTTCCAAGTACGGCCCTGCTTATGTCTCCGGCCCTGTCTTCTTCATCTTCGAGAAGGTCTCCACTTTCATCCCCGTTGAAG AAAAGCCGGCTGAGGAAGCTCCGGCCGTTGAAGCCACCGCCAGCAAAGAGAAGGAAATCGTCATCGAGGAAACTCCGGCGGAGAAGAAAGAAGAAGCGGC GCCCGCAGCTGTTGTAGCAGCCACGCGTGAGAACGGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCCCGGGGGGGGGCCC GCCCGGCGGGGGGAACCCCCCCGCCGCTGCCGTCACGCCGGAGGCGCCAAAGGCATGATTGATGATGCAAAAGTTAGTGATATGTTTGTGAAAAAAGAAA GAAGGGTGATTATATCGTTATGA
AA sequence Show only first row Show all	>Lus10036243 pacid=23169418 polypeptide=Lus10036243 locus=Lus10036243.g ID=Lus10036243.BGIv1.0 annot-version=v1.0 MGYWKSKVLPKIKKVFEKDTAKKAAAAEATKTFDASKEEITKEFDDKKTELQPKVLEVYQASSAEIKTVVKGPTEAGLKKHSTSVVKFFEELVKIEFPGS KVVSEACSKYGPAYVSGPVFFIFEKVSTFIPVEEKPAEEAPAVEATASKEKEIVIEETPAEKKEEAAPAAVVAATRENGXXXXXXXXXXXXXXXGPGGGP ARRGEPPRRCRHAGGAKGMIDDAKVSDMFVKKERRVIISL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10036243 [exp]	0	1
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10038383 [exp]	1.0	0.9643
AT2G26670		GUN2, ATHO1, TE...	REVERSAL OF THE DET PHENOTYPE ...		Lus10005718 [exp]	1.4	0.9600
AT2G39130			Transmembrane amino acid trans...		Lus10039190 [exp]	1.7	0.9554
AT4G32140			EamA-like transporter family (...		Lus10041032 [exp]	3.0	0.9388
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10038738 [exp]	3.2	0.9487
AT3G17810		PYD1	pyrimidine 1 (.1)		Lus10017995 [exp]	3.5	0.9534
					Lus10011059 [exp]	3.7	0.9340
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10018888 [exp]	4.0	0.9402
AT4G24480			Protein kinase superfamily pro...		Lus10042868 [exp]	4.6	0.9253
AT1G63500			Protein kinase protein with te...		Lus10008494 [exp]	6.3	0.9269

Compare expression of checked genes

Lus10036243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.