Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44650 168 / 9e-52 Y3IP1, AtCEST Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038385 [exp] 344 / 9e-122 AT5G44650 163 / 2e-49 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein Lus10024729 [exp] 202 / 2e-64 AT5G44650 217 / 3e-69 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein Lus10008075 [exp] 172 / 7e-51 AT5G44650 209 / 2e-63 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G074200 [exp] 209 / 9e-68 AT5G44650 266 / 3e-89 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036245 pacid=23169459 polypeptide=Lus10036245 locus=Lus10036245.g ID=Lus10036245.BGIv1.0 annot-version=v1.0 ATGGCGACGACTCTATCCTTTCATCTCTCCAAATTCCCAACTTCTTCCTCAGTACCGGTTCCGTCTCCTTACCGGAAACCCTATTTCGTTTTCTTACCGG TAAGAGGATTGGGAATCAGTAGCACCAATTGCGCCACCAGGAGTCGGAGGAGGAACACCGGGATGTTGTTGGTCGGTAGAGAGGATGCTGAGCTGCAGGT TGAAGAAGGAGAAGAAGAATTGCCGCCGTCCCCTCAGGACCTCGAGAACATTCAAGAAATCAAAAGGGTGTTGCAGCTGCTTAAAAAGAACAGAGATATG GATTTCTATGAGGTCAAGCTGACGATATCGATTGAGGACCCAAGGGAAGTGGAAAGAAGGAAGCTTTTCGGCATTGAAGATCCGGATGCTCCTACCAGAG AAGACCTTGCTGATGCTTTGGAATCAGTCAAGGAGGGCAAGATCCCCGGAAATCGCTCCGCACTTCAAATGCTAGCTGATGAGATGACGAACTGGCCTAA TTTAGAGGTGGATGCTTTCAAGACGAAGAAGAAGCCAACGAAATCACTCTACGCAAGAATCACAGACACTGGTGTTGATCTTAAAGAGGCTGCCAAGAGA CTCAAATCCGACTGGGATTCAGACCGAAACTGA
AA sequence Show only first row Show all	>Lus10036245 pacid=23169459 polypeptide=Lus10036245 locus=Lus10036245.g ID=Lus10036245.BGIv1.0 annot-version=v1.0 MATTLSFHLSKFPTSSSVPVPSPYRKPYFVFLPVRGLGISSTNCATRSRRRNTGMLLVGREDAELQVEEGEEELPPSPQDLENIQEIKRVLQLLKKNRDM DFYEVKLTISIEDPREVERRKLFGIEDPDAPTREDLADALESVKEGKIPGNRSALQMLADEMTNWPNLEVDAFKTKKKPTKSLYARITDTGVDLKEAAKR LKSDWDSDRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10036245 [exp]	0	1
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Lus10005908 [exp]	2.2	0.8617
AT3G07670			Rubisco methyltransferase fami...		Lus10012309 [exp]	2.4	0.8528
AT3G23580		RNR2A	ribonucleotide reductase 2A (....		Lus10004435 [exp]	6.0	0.8177
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10026573 [exp]	6.9	0.8355
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10033247 [exp]	8.9	0.7944
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Lus10027693 [exp]	10.0	0.8219
AT1G44920			unknown protein		Lus10018656 [exp]	11.0	0.8108
AT2G45270		GCP1	glycoprotease 1 (.1)		Lus10000791 [exp]	11.3	0.8310
AT5G62650			Tic22-like family protein (.1)		Lus10039294 [exp]	14.1	0.8122
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10022856 [exp]	14.4	0.7375

Compare expression of checked genes

Lus10036245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.