Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20190 115 / 1e-29 unknown protein AT1G30850 107 / 4e-27 RSH4 root hair specific 4 (.1) AT2G34910 104 / 3e-26 unknown protein AT5G44660 99 / 4e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038386 [exp] 399 / 4e-141 AT4G20190 84 / 2e-18 unknown protein Lus10008075 [exp] 233 / 2e-72 AT5G44650 209 / 2e-63 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G074300 [exp] 203 / 6e-63 AT4G20190 135 / 4e-36 unknown protein Potri.003G156700 [exp] 188 / 4e-57 AT4G20190 129 / 1e-33 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036246 pacid=23169404 polypeptide=Lus10036246 locus=Lus10036246.g ID=Lus10036246.BGIv1.0 annot-version=v1.0 ATGACCCATGGGGTTTATGAGTGCGATCTCGAGAAACAAATTTCTGTGGATCCAATTTCGCTGATTTTGCCGCGGATTGTTACGAATCCAATGCTTCCAC CGCCATCGCCCAAATTGCTGAGTCTACCTAACTCGCCGCGGTTCGGTTTATGGATGAAGAAGAAATTCAGCCACGCCTCACCCCGCCAAATCCACCACGG CAGATCTCTTCGGAAATGCTCCACTGTTCACCCTCATCATCATAATCATCTTCCGAACGAAACTCAGTTGAGGCGGAGTAAGTCCTGCGCGGAGGGGAGA TCCAGTGGAGTTGATGAACTCGATGTTTGGTTCAAGAATCCCGACGAATTCGTAGTAGAACCAAACGGAAAATCATCTTCTTCTTCGCCGATGGCAGGGA CGGAGAAGAGGAATAAGGAGGAAGAAGAATTCAAATGTGGAGCGCTCTGCTTGTACCTTCCGGGATTCGGCGGCGGAAAGGTGAAGCCGGTGAGAGAGAG GAAGGAGGGAGTGATCATATCGAGGACGGTGTCTCTGGAGAAATTTGAATGTGGTTCGTGGGCGTCGTCAGCGATTATTAACGGAGAGGTGGAAGAGTCG TCGACGCGATTTTACTACGATTTGCCGATGGAGATGATTAGGACAGTGGGGAACGAGACGCATTCCCCGGTGACTACAGCGTTCGTGTTCGAGAACGATC TGAAAGGGGTGCTGAAGAAGAACGGTTCCACGACGCCGAATAGGAAGTCGTCGGAGGAATCATACTCCGCAAGGCAAGTGCGGTTTTCGAGGTCGACGTC TTCGGCATCGAATCCTTCGTCACCGGCGATGTGCATTACGCCGCGATTGCGCAAGGCCAGGGAAGAGTTCAACGCTTTCCTAGAAGCAGAAGCGCGGACC TCCTGA
AA sequence Show only first row Show all	>Lus10036246 pacid=23169404 polypeptide=Lus10036246 locus=Lus10036246.g ID=Lus10036246.BGIv1.0 annot-version=v1.0 MTHGVYECDLEKQISVDPISLILPRIVTNPMLPPPSPKLLSLPNSPRFGLWMKKKFSHASPRQIHHGRSLRKCSTVHPHHHNHLPNETQLRRSKSCAEGR SSGVDELDVWFKNPDEFVVEPNGKSSSSSPMAGTEKRNKEEEEFKCGALCLYLPGFGGGKVKPVRERKEGVIISRTVSLEKFECGSWASSAIINGEVEES STRFYYDLPMEMIRTVGNETHSPVTTAFVFENDLKGVLKKNGSTTPNRKSSEESYSARQVRFSRSTSSASNPSSPAMCITPRLRKAREEFNAFLEAEART S

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20190			unknown protein		Lus10036246 [exp]	0	1
AT1G03350			BSD domain-containing protein ...		Lus10034015 [exp]	1.0	0.7222
AT1G77700			Pathogenesis-related thaumatin...		Lus10028079 [exp]	11.2	0.6398
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10002770 [exp]	15.5	0.6589
AT5G27260			unknown protein		Lus10006034 [exp]	18.5	0.5848
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10002600 [exp]	22.0	0.6789
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10031005 [exp]	23.5	0.6564
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10006209 [exp]	27.0	0.6017
					Lus10023751 [exp]	36.2	0.6377
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10023037 [exp]	38.5	0.6170
AT1G80245			Spc97 / Spc98 family of spindl...		Lus10018344 [exp]	39.0	0.5480

Compare expression of checked genes

Lus10036246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.