Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44670 582 / 0 Domain of unknown function (DUF23) (.1) AT4G20170 582 / 0 Domain of unknown function (DUF23) (.1) AT2G33570 419 / 2e-142 Domain of unknown function (DUF23) (.1) AT5G48190 118 / 6e-32 Domain of unknown function (DUF23) (.1) AT3G60990 118 / 6e-32 Domain of unknown function (DUF23) (.1) AT3G07380 115 / 6e-31 Domain of unknown function (DUF23) (.1) AT4G37420 44 / 0.0002 Domain of unknown function (DUF23) (.1) AT3G27330 42 / 0.0008 zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038387 [exp] 847 / 0 AT5G44670 639 / 0.0 Domain of unknown function (DUF23) (.1) Lus10008076 [exp] 771 / 0 AT5G44670 642 / 0.0 Domain of unknown function (DUF23) (.1) Lus10024731 [exp] 588 / 0 AT5G44670 491 / 1e-170 Domain of unknown function (DUF23) (.1) Lus10010731 [exp] 43 / 0.0005 AT1G27200 555 / 0.0 Domain of unknown function (DUF23) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G156600 [exp] 699 / 0 AT5G44670 598 / 0.0 Domain of unknown function (DUF23) (.1) Potri.001G074600 [exp] 696 / 0 AT5G44670 613 / 0.0 Domain of unknown function (DUF23) (.1) Potri.005G258900 [exp] 403 / 4e-136 AT2G33570 706 / 0.0 Domain of unknown function (DUF23) (.1) Potri.005G252100 [exp] 45 / 0.0002 AT4G37420 540 / 0.0 Domain of unknown function (DUF23) (.1) Potri.010G039000 [exp] 44 / 0.0004 AT1G27200 582 / 0.0 Domain of unknown function (DUF23) (.1) Potri.008G192000 [exp] 43 / 0.0006 AT1G27200 585 / 0.0 Domain of unknown function (DUF23) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01697 [flax] [poplar] Glyco_transf_92 Glycosyltransferase family 92
Representative CDS sequence Show only first row Show all	>Lus10036247 pacid=23169331 polypeptide=Lus10036247 locus=Lus10036247.g ID=Lus10036247.BGIv1.0 annot-version=v1.0 ATGAACTGCGCCACCGAGCTCAAACTCCTCCTCACCGCTCTCCTTATCCTCTGCTCCGTCGCTACTTTCCTCCAGTTCATCCCTTCCCGCTTCGCAATCT CAACCTCCGACCTCCGCTTCTGCATCTCCCGTATCACCACCACCACAACCACCACAACCACCACCGCCTTACCATCTCTCAATTCTTCCTCCTCCGCCGC CTCCGTTGCCGCTCTCACAGCTTCGCGTCTCGTCCTCCCACCGGCACCGCCTCTCCCTTCTTCTACTCCTCCGTCCGCCGCCGCTGTCGAGAAGGAGAAG GTGCAGGAGAACGGTGTAATAAAGCGAGTGTTCAACCCGTACGGCTCCGCTGCGTACAATTTCATCACCATGGGGACATACAGAGGCGGAATCAACACCT TCGCCATCAACGGCCTCGCCTCAAAACCCCTCCACCTCTACTCCAAGCCTACTTACCAATGCGAGTGGGTCCCGCATTCTTCCAATTCCGATTCGAATTC AAATTCCTCCTCCGTGAAAACCACCGTCGGTTACAAAATGCTTCCAGATTGGGGCTACGGCAGGGTCTATACAGTCGTAATCGTCAACTGCACTTTCTCC GAGCCGATCAACACTGACAATTCCGGAGGCAAGCTATACCTCCTCGCCTCCACATCGGGAGGCGGCGACGCCAAATCAAACATCACCGACCGATTCGAGG TCCTCGACGAGCCAAAATCCACTGTCGATTTCCAGATCTACAACTCCAAGCCGAAATACGACTACCTCTACTGCGGCTCGTCGCTGTACGGCCAGCTGAG CCCGCAGAGAGTAAGAGAGTGGATCGCCTACCATGTCCGGATGTTCGGAGAGAAGTCGCATTTCGTAATTCACGACGCCGGCGGTGTCTACGACGAGGTT TTCGAGGTTCTGAAGCCGTGGATGGAGCTAGGGTATGTGACACTACAGGACATTAGGGACCAGGAGAGGTTCGATGGGTACTACCACAACCAGTTCATGG TGGTGAACGATTGCCTTCACCGGTACAAATTTCAGGCCAAGTGGATGTTCTTCTTCGACGTGGACGAGTTTCTCTACGTGCCGCCGAAGAGTACCATCAA ATCGGTGATGGATTCGCTTTCCGATTATACTCAGATCACCATTGAGCAGATGCCGATGAACAGCAAGCTCTGCCTCTCCGCCGATTATGGCAGATACTAC AGGAAATGGGGGTTTGAGAAGATGGTGTACAAGGACGTGAAGAGAGGAGTAAGAAGGGACAGAAAATACGCAATCCAGCCTAGAAATGTGTACGCCACGG GAGTCCACATGTCGCAGAACTTCGCCGGAAAGACCAACCACAAGACGGAAGGGAGGATCAGGTACTACCATTACCACGGGTCGATTGCTCAGCGGCGGGA GCCTTGCCGGAACTTGCTCAACGCCACCGACACGTGGTTCGAGAAGACCCCCTATGTGCTGGACACAACCATGAGGGACATCGGCTGGGCTGTGAAGAAA TTCGAGCTCAGGATGATCGGCAACAGGCTGCAAAATACCCGCCAATAA
AA sequence Show only first row Show all	>Lus10036247 pacid=23169331 polypeptide=Lus10036247 locus=Lus10036247.g ID=Lus10036247.BGIv1.0 annot-version=v1.0 MNCATELKLLLTALLILCSVATFLQFIPSRFAISTSDLRFCISRITTTTTTTTTTALPSLNSSSSAASVAALTASRLVLPPAPPLPSSTPPSAAAVEKEK VQENGVIKRVFNPYGSAAYNFITMGTYRGGINTFAINGLASKPLHLYSKPTYQCEWVPHSSNSDSNSNSSSVKTTVGYKMLPDWGYGRVYTVVIVNCTFS EPINTDNSGGKLYLLASTSGGGDAKSNITDRFEVLDEPKSTVDFQIYNSKPKYDYLYCGSSLYGQLSPQRVREWIAYHVRMFGEKSHFVIHDAGGVYDEV FEVLKPWMELGYVTLQDIRDQERFDGYYHNQFMVVNDCLHRYKFQAKWMFFFDVDEFLYVPPKSTIKSVMDSLSDYTQITIEQMPMNSKLCLSADYGRYY RKWGFEKMVYKDVKRGVRRDRKYAIQPRNVYATGVHMSQNFAGKTNHKTEGRIRYYHYHGSIAQRREPCRNLLNATDTWFEKTPYVLDTTMRDIGWAVKK FELRMIGNRLQNTRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44670			Domain of unknown function (DU...		Lus10036247 [exp]	0	1
AT5G44670			Domain of unknown function (DU...		Lus10038387 [exp]	1.0	0.9764
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036112 [exp]	1.4	0.9703
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10002979 [exp]	1.7	0.9590
AT3G27470			Protein of unknown function (D...		Lus10032090 [exp]	3.2	0.9428
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10036709 [exp]	3.5	0.9353
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10037377 [exp]	4.5	0.9463
AT3G20300			Protein of unknown function (D...		Lus10002334 [exp]	5.7	0.8801
AT1G28280			VQ motif-containing protein (....		Lus10041929 [exp]	6.0	0.9263
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002984 [exp]	6.3	0.9329
AT2G47600		ATMHX1, ATMHX	MAGNESIUM/PROTON EXCHANGER 1, ...		Lus10007879 [exp]	6.6	0.9170

Compare expression of checked genes

Lus10036247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.