Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44680 339 / 1e-115 DNA glycosylase superfamily protein (.1) AT3G12710 309 / 2e-104 DNA glycosylase superfamily protein (.1) AT5G57970 218 / 2e-68 DNA glycosylase superfamily protein (.1.2) AT1G75090 206 / 4e-64 DNA glycosylase superfamily protein (.1) AT1G13635 204 / 3e-63 DNA glycosylase superfamily protein (.1.2) AT1G15970 202 / 2e-62 DNA glycosylase superfamily protein (.1) AT1G80850 195 / 8e-60 DNA glycosylase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038388 [exp] 413 / 9e-146 AT5G57970 256 / 6e-84 DNA glycosylase superfamily protein (.1.2) Lus10026083 [exp] 220 / 3e-69 AT5G57970 308 / 6e-104 DNA glycosylase superfamily protein (.1.2) Lus10002310 [exp] 213 / 3e-66 AT1G80850 299 / 3e-100 DNA glycosylase superfamily protein (.1) Lus10019198 [exp] 183 / 1e-56 AT1G13635 300 / 4e-103 DNA glycosylase superfamily protein (.1.2) Lus10019199 [exp] 129 / 5e-35 AT1G13635 222 / 2e-71 DNA glycosylase superfamily protein (.1.2) Lus10036835 [exp] 120 / 8e-32 AT1G13635 216 / 2e-69 DNA glycosylase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G156500 [exp] 374 / 1e-128 AT5G44680 370 / 8e-127 DNA glycosylase superfamily protein (.1) Potri.001G074700 [exp] 372 / 6e-128 AT5G44680 395 / 7e-137 DNA glycosylase superfamily protein (.1) Potri.010G175300 [exp] 351 / 1e-119 AT3G12710 372 / 1e-128 DNA glycosylase superfamily protein (.1) Potri.008G081000 [exp] 348 / 9e-119 AT5G44680 390 / 6e-135 DNA glycosylase superfamily protein (.1) Potri.010G137300 [exp] 206 / 2e-64 AT1G13635 380 / 7e-133 DNA glycosylase superfamily protein (.1.2) Potri.018G106900 [exp] 208 / 3e-64 AT5G57970 418 / 2e-146 DNA glycosylase superfamily protein (.1.2) Potri.006G184700 [exp] 206 / 2e-63 AT5G57970 473 / 8e-168 DNA glycosylase superfamily protein (.1.2) Potri.008G112300 [exp] 200 / 8e-62 AT1G13635 372 / 9e-130 DNA glycosylase superfamily protein (.1.2) Potri.003G182300 [exp] 200 / 2e-61 AT5G57970 286 / 1e-94 DNA glycosylase superfamily protein (.1.2) Potri.014G041700 [exp] 199 / 3e-61 AT1G75090 332 / 2e-113 DNA glycosylase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03352 [flax] [poplar] Adenine_glyco Methyladenine glycosylase
Representative CDS sequence Show only first row Show all	>Lus10036248 pacid=23169332 polypeptide=Lus10036248 locus=Lus10036248.g ID=Lus10036248.BGIv1.0 annot-version=v1.0 ATGTGTGCATCAAAGCTAAAGCAACAAACTGTTACCAACATCTCCACAACCACAACACCACAAGCTCTAGTCAACAACATCAATGGCCGTCCAGTCCTTC AACCCAAATCCAACCAAGTCCCAACTAATTTCACCTTAGATAGGAAGAACTCACTCAAAAAGACCTCTCCCCCAACCCCAAGATCACCCACCAACACAAA GTCCAAACCTTTGTCTCCTCCTTCCACCCGAACCTTACGCAAGGCCGCTTCATTCACCCTCGAAAGGACCCTCACCTTCGAGTCTTCTCTAATCGTCGAG GCTCCCGGAACCATCGCTGCTGCGAGGAGGGAACACGTGGCGATTATGCAGGAGCAGAGGAAGATGAGGACTGCACATTATGGCAGGACCAAGTCCTGCA AGATTCGTTCCTCTTCTTCCCCAACTAATGTAATTGGGGAAGAAGAGGCGGGTTTCGAGCAGCCGAAGAGATGCAACTTCATCACACCGAATTCTGATCC GATCTATGTCGCTTACCATGATGAAGAATGGGGGGTTCCTGTTCATGACGACAATTTGCTGCTGGAACTTCTGGTGTTGACTGGTGCACAAGTGAGGTCA GATTGGACTTCGGTTTTGAAGAAAAGGGAAGCAATTAGAGAGGCTTTTTCTGGGTTTGATCCAGAAGTTGTGTCCACGTTCAATGAGAAGAAGATGGGTT CTATCAGCTTGGAATATGGGATCGACATTTGCCAAGTTCGTGGGGTAGTTGACAATGCTAGATGTATTCTTGAGGTAAAGAGGGAATTTGGGTCATTTGA CAAATACCTATGGAAGTTTGTGAACAACAAGGCAATGGCAAGCCAGTACAGAGCAAGCCACAAGATGCCAGTGAAGAGCTCAAAATCAGAGAGCATAAGC AAAGACATGGTGAAGAGAGGGTTCAGGCTGGTTGGTCCAACTGTAATCCACTCATTCATGCAAGCAGCTGGACTCATCAATGACCACTTACTCTCTTGCC CAAGGCACCTCCAATGCCAACTCTTGCTCTGA
AA sequence Show only first row Show all	>Lus10036248 pacid=23169332 polypeptide=Lus10036248 locus=Lus10036248.g ID=Lus10036248.BGIv1.0 annot-version=v1.0 MCASKLKQQTVTNISTTTTPQALVNNINGRPVLQPKSNQVPTNFTLDRKNSLKKTSPPTPRSPTNTKSKPLSPPSTRTLRKAASFTLERTLTFESSLIVE APGTIAAARREHVAIMQEQRKMRTAHYGRTKSCKIRSSSSPTNVIGEEEAGFEQPKRCNFITPNSDPIYVAYHDEEWGVPVHDDNLLLELLVLTGAQVRS DWTSVLKKREAIREAFSGFDPEVVSTFNEKKMGSISLEYGIDICQVRGVVDNARCILEVKREFGSFDKYLWKFVNNKAMASQYRASHKMPVKSSKSESIS KDMVKRGFRLVGPTVIHSFMQAAGLINDHLLSCPRHLQCQLLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44680			DNA glycosylase superfamily pr...		Lus10036248 [exp]	0	1
AT5G57970			DNA glycosylase superfamily pr...		Lus10038388 [exp]	1.0	0.9803
AT2G20760			Clathrin light chain protein (...		Lus10039815 [exp]	1.4	0.9471
AT1G23965			unknown protein		Lus10030844 [exp]	2.4	0.9448
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Lus10010061 [exp]	2.8	0.9256
AT2G42380	bZIP	ATBZIP34	Basic-leucine zipper (bZIP) tr...		Lus10033630 [exp]	6.8	0.8604
					Lus10025831 [exp]	7.3	0.8575
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009623 [exp]	7.4	0.9249
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10035976 [exp]	7.7	0.9058
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10024834 [exp]	8.1	0.8893
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Lus10033234 [exp]	8.5	0.8601

Compare expression of checked genes

Lus10036248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.