Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34920 105 / 3e-23 EDA18 embryo sac development arrest 18, RING/U-box superfamily protein (.1) AT1G30860 94 / 2e-19 RING/U-box superfamily protein (.1) AT4G20160 84 / 3e-16 unknown protein AT5G44690 77 / 2e-14 unknown protein AT2G27950 53 / 1e-06 Ring/U-Box superfamily protein (.1) AT5G04460 51 / 3e-06 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038389 [exp] 808 / 0 AT4G20160 155 / 2e-40 unknown protein Lus10017455 [exp] 65 / 3e-10 AT5G04460 858 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10028827 [exp] 64 / 3e-10 AT5G04460 879 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10038656 [exp] 63 / 7e-10 AT5G04460 930 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10037928 [exp] 63 / 1e-09 AT5G04460 912 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10021403 [exp] 53 / 1e-06 AT2G27950 470 / 5e-154 Ring/U-Box superfamily protein (.1) Lus10016162 [exp] 51 / 3e-06 AT2G27950 278 / 6e-85 Ring/U-Box superfamily protein (.1) Lus10038390 [exp] 0 / 1 AT5G04460 49 / 1e-06 RING/U-box superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G156400 [exp] 202 / 3e-54 AT2G34920 172 / 5e-45 embryo sac development arrest 18, RING/U-box superfamily protein (.1) Potri.001G074800 [exp] 184 / 8e-48 AT1G30860 179 / 1e-46 RING/U-box superfamily protein (.1) Potri.008G030100 [exp] 65 / 2e-10 AT5G04460 805 / 0.0 RING/U-box superfamily protein (.1.2.3) Potri.010G231100 [exp] 64 / 3e-10 AT5G04460 768 / 0.0 RING/U-box superfamily protein (.1.2.3) Potri.009G003500 [exp] 54 / 5e-07 AT2G27950 578 / 0.0 Ring/U-Box superfamily protein (.1) Potri.004G217700 [exp] 53 / 1e-06 AT2G27950 533 / 2e-177 Ring/U-Box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036249 pacid=23169330 polypeptide=Lus10036249 locus=Lus10036249.g ID=Lus10036249.BGIv1.0 annot-version=v1.0 ATGGCGTCATTTCAGGTTGAGATGGCTGCTGCATCTTCGTCTCCGTTCGGCTGCGTTCTTCGTGACCGGAATCGATGCAGCAACAGGGAGACAACCACCG CCGCCACCGCCGCCGTACCCTCAACCGCTACCACCACCAGTTCATCAAAAGCCGCCGCCGCTGCTTTCCAGAAGAACCTCAAGGTTCTGGTGAGAGACCA TCTCCACACCTGCATTTCTGTTTCTCCCGACGAGAACGAGAACGAGAACGAGAACGTCGCGGATAATAACAGCACTCGCACCGCCTCTTCTAAACCTGAA TCAACAAGGAATAATAATAACAACAACAGCAACAATAACAACAATATGAGCAGCCGGATGAGCAGCCGTCAGGCGAGGAATTTGGACCGGTGGGCGGCGA AGCAGGCGGAGCAGATGGTGTCCACGATCGAACGGCAGAGACAGGAGGCGGAGGAGCTATGGGTGGTGGCGTCGAGTAATCCGAGCAATTCTTCGAAAAA GGAAACGGAGAACTGCGTAATCTCATCGCAAAGTTCGATAGCGGATAGCGAGTGTTCTTCTCTAATCGGAGCTTCATCGCTGGTGCAGATGTGGGAGGCG AGGATGAATCATCCTAAACTGAAGCCTCTACACAGCAGGTCCAGTTCAATTTCCAGCCTCGACAATTTAGCGGAAGAGCCCGCTAGGCATTCCGATGTTT GTCTCGAGACCGTCTCTAACAATGACTTGCTCACGGATTGGGTGGATTCCGCGGCTCAGAGCACAGTTTCGGCGTCTATCCCGAACCGGCATTCGGATGT GGGAGCGGATGGGGAGAAAGTTAGGATTGCAGATATCATCAGGCGGCTGACTTGTGATGTTCACGAGCACCAGCAACACCATAATCAACATCATAATCAT GGTCAGCATCAAGATTCAGGGAATGTAGTACATTGCGATACTCCCAGACGGCATTCCATTAGCTGTGAGCCGGCTGAACACAGATGGTCAATGGTTGTGA GCTCTCCAAGGATTCGCGGCCGGCAAGCTTTTCATGATTTGCTTGTCCACATTGAGCAGGACCGCCATAAAGAGCTTGGCTACCTTGCTGACCGTCACGC GGTCTCCAAATTTTCCTACCGTGGCCGCATTCAGTCTCTGCTCAAGCTAAGGTTCTTGAGGCGAGACATGGGAGGTCAAAGTCGACCGGTGCCACCGCCA CCAGCCTGTAGACCTCCGCAGCATAGTTCAAGCATTATGCAGCTTAGGGAGAGATTAAGGGCGTCCCTTCAGCCAGCTAAAACTAGCGAGAGGGAAGCAG TAGTTGCTGCACCAACAAGGGTAGAGAATCATAGTAGAAAAGTAGACAACACTTGCTCCACTCAGACTCAGTTGACAAGTGAGAGTCAGCCGAAAGAAAA GGTTTCTCCAATGGAAGAACAATGTCCGGTTGCGGTGGCAGCAAATATTAAACAGCAACCGCAGAAGTTGAGGCAAGAGCCGACACAAGAACAGCAGCTT GAACTACGGACTGAGGTGGTATCTGTTTGTCCACAGGTATTGGATAAGAAAGAGACAGGTGAAAGAGTTGAGAATGTAGTGGTGAATCATCATGTAGAAG AACAATCAGACTACCCTGAACCCGAGAAGGCAGATACCAGCCCATTTCAGGATTCGGTGGAAGCATGGCAAGAACGATTTTTGGACTGTGCAATCGGGGA AGAAGCCGAGCCAGAAGAAGAAGGAGATGGAGAGGGAGATGAAGAATTTGATGAAGAAGAAGAAGAAGAAGAACAGCAGGATTACGTTGAGGAAGCCCCA TATGATTGGTTTAGTGACATAGCTAGGCCACGCAGCTATTGGGAAGACATGAGGCGTTCTTGGTACGATGAGATGCTGAACAATGGCAATGGAAACAGAG ACATTAAGGAACTTCTGGAGAGGAAAACAGTGTCGAGTTTTCTAGCTAGTGACTTTAGAGACAGGATTGATAGGCTGATGATATCCAGAACCCGTATCCA AGCTACACAAGAACAGCCAGAGTCAGACGTTGAGGAAAATCAGGAAAGAATGGCGCAGTTGGCATTATCATACTTCCGCAGGGAGAATACTGATGGGTCA CAGGAATTACAACACCCTATGGTAGACGATGACAGGGGAGAAATAGAGGAAACTGATGAAGGGACAGAGGAGGAAGAATCTCCATTATCATCATCATCAG AAGAAGAGGAGGACGAGGAGGGGGAGTCAGAAGAGTACATGGAGCAGGATGAGCATCGTGAAGAGAGCTTAACAAGCCGGCAATTTGTGGAAGCAAACGA TCTTTTTGATCGGTCATCTCATCAATCATCGGTCTTCACCGCTTCTCCATTCAGGCCATGGCAATCGGTGGAGGAGTACGAGCGATTCTCGAATGCAAAC TCCCAACAACATCATCAGTCATTCCGGGGTAGTAGTAATCAGGAGAGAAAGTGCTCGTGTTGTCCAACTCATGCATCCATTGACGTGGATGTAGTGAATG AATTGAGAGGGAATGTGGCGGAGCTCAGGAATGAAGTGGCGAATCTGAAGAAGCTAGTGCAGAGCTGCATGGAAATGCAGATGAGGTTTGCCAAGCTGCT TCCTGGTGAAGTAGGACCATGGACGAGTTTTCAATGA
AA sequence Show only first row Show all	>Lus10036249 pacid=23169330 polypeptide=Lus10036249 locus=Lus10036249.g ID=Lus10036249.BGIv1.0 annot-version=v1.0 MASFQVEMAAASSSPFGCVLRDRNRCSNRETTTAATAAVPSTATTTSSSKAAAAAFQKNLKVLVRDHLHTCISVSPDENENENENVADNNSTRTASSKPE STRNNNNNNSNNNNNMSSRMSSRQARNLDRWAAKQAEQMVSTIERQRQEAEELWVVASSNPSNSSKKETENCVISSQSSIADSECSSLIGASSLVQMWEA RMNHPKLKPLHSRSSSISSLDNLAEEPARHSDVCLETVSNNDLLTDWVDSAAQSTVSASIPNRHSDVGADGEKVRIADIIRRLTCDVHEHQQHHNQHHNH GQHQDSGNVVHCDTPRRHSISCEPAEHRWSMVVSSPRIRGRQAFHDLLVHIEQDRHKELGYLADRHAVSKFSYRGRIQSLLKLRFLRRDMGGQSRPVPPP PACRPPQHSSSIMQLRERLRASLQPAKTSEREAVVAAPTRVENHSRKVDNTCSTQTQLTSESQPKEKVSPMEEQCPVAVAANIKQQPQKLRQEPTQEQQL ELRTEVVSVCPQVLDKKETGERVENVVVNHHVEEQSDYPEPEKADTSPFQDSVEAWQERFLDCAIGEEAEPEEEGDGEGDEEFDEEEEEEEQQDYVEEAP YDWFSDIARPRSYWEDMRRSWYDEMLNNGNGNRDIKELLERKTVSSFLASDFRDRIDRLMISRTRIQATQEQPESDVEENQERMAQLALSYFRRENTDGS QELQHPMVDDDRGEIEETDEGTEEEESPLSSSSEEEEDEEGESEEYMEQDEHREESLTSRQFVEANDLFDRSSHQSSVFTASPFRPWQSVEEYERFSNAN SQQHHQSFRGSSNQERKCSCCPTHASIDVDVVNELRGNVAELRNEVANLKKLVQSCMEMQMRFAKLLPGEVGPWTSFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20160			unknown protein		Lus10036249 [exp]	0	1
AT1G03170		FAF2	FANTASTIC FOUR 2, Protein of u...		Lus10014665 [exp]	1.0	0.9383
AT4G04940			transducin family protein / WD...		Lus10036625 [exp]	2.0	0.9149
AT5G02190		EMB24, ATASP38,...	PROMOTION OF CELL SURVIVAL 1, ...		Lus10024375 [exp]	3.5	0.8905
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10022645 [exp]	4.5	0.8981
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10013956 [exp]	5.3	0.9018
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10042499 [exp]	5.7	0.8854
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10031628 [exp]	5.7	0.9094
					Lus10042511 [exp]	7.2	0.8674
AT5G22370		QQT1, EMB1705	QUATRE-QUART 1, EMBRYO DEFECTI...		Lus10007747 [exp]	7.7	0.8771
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10019391 [exp]	8.7	0.8455

Compare expression of checked genes

Lus10036249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.