Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20140 1306 / 0 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 1222 / 0 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17230 591 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 573 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 567 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G24240 559 / 4e-179 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G46330 523 / 6e-165 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT3G49670 515 / 5e-164 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G73080 518 / 1e-163 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT5G65700 509 / 1e-161 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038392 [exp] 1864 / 0 AT4G20140 1376 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10027688 [exp] 560 / 0 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10008849 [exp] 535 / 1e-169 AT1G73080 648 / 0.0 PEP1 receptor 1 (.1) Lus10039030 [exp] 511 / 6e-161 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1) Lus10023323 [exp] 503 / 8e-158 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10008712 [exp] 499 / 1e-157 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10011761 [exp] 495 / 5e-157 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003612 [exp] 500 / 1e-156 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10015393 [exp] 495 / 2e-156 AT1G28440 1372 / 0.0 HAESA-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G156200 [exp] 1399 / 0 AT4G20140 1394 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G075000 [exp] 1352 / 0 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.013G051300 [exp] 571 / 0 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G088900 [exp] 565 / 0 AT4G20140 700 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G139700 [exp] 565 / 0 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G120733 [exp] 561 / 2e-178 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120700 [exp] 561 / 2e-178 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.001G053400 [exp] 555 / 4e-178 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.019G025500 [exp] 555 / 7e-178 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G258400 [exp] 555 / 2e-176 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10036251 pacid=23169384 polypeptide=Lus10036251 locus=Lus10036251.g ID=Lus10036251.BGIv1.0 annot-version=v1.0 ATGGAATTCCTCCACCTTCTCGCCGCCGTCCTCCTCCTTCTTTCCCTAACTGGTTCCGTTACGTCTCGGAACCACGACCTTGAAGCTCTTCTCAAAGTGA AGGAATCACTCATCTCCGGCGAAGCAAGCTTCCTCACCGACTGGAACCGAACCATCAACCCGAATTTCTGCAAATGGACAGGGGTGACTTGCGGGCCGGG TCGGGTGGTAACGGGTCTGAACCTATCCGACTCGTCGCTATCCGGGTCGATCCCGCCGGAAATTGGCCGGTTACGGAACCTGCTCCACCTTGATCTCTCT TCAAACTCCTTAACGGGTCCCATCCCAACCACCCTGGTTAACCTTTCCGCATTGGAATCTTTGCTTTTGTATTCCAACCAACTCACCGGTCGGATTCCGG ACCAGCTCGGTTCGCTCTTGAAACTCCGGGTCGTCCGAATCGGAAACAACTACCTCACGGGTGGAATCCCTGATTCTTTGGGCAACCTACATCAATTGGT CACTCTAGGTCTCGCTTCTTGCAGTCTGACCGGAATTATCCCGCCTCGACTCGGCCGGCTTGGCCGAATCGAGGAGCTGATTCTACAGGATAACCAGCTC GAAGGACCGATTCCTTCCGAGTTGGGTAACTGCTCCAACCTCACCCACATCGTTCTAGGACAAAACAACTTGAACGGAACGATTCCGAGTCAACTCGGTC GGTTGCGAAATCTCGAAAATCTCAACCTGGTGAATAACAGCTTCCTCAGCGGCGAGATACCGAGTCCACTCGGAAGCTTGACTCAGCTCCTCTACCTCAA CCTCGCTGGGAATCAGCTCGAAGGTCCAATTCCGACTTCGCTAGCTCAATTGGGTAACCTTAACAATCTGGATTTATCGTTCAACAAGCTCACCGGCGAG ATTCCTGATGAATTCTTCTCTGGAATGGGTCAGCTTCTTTACCTAGCCTTGTCGAGTAACAATCTCACCGGCGTCCTTCCTAGAGGAATCTGCGCCAATA AAACCAATCTGTTGAAGCTTATCCTGTCAGAAACTCAGCTCACCGGCTCGATTCCAGGGGAGCTGGTGAATTGCAGAGCCCTCGAACAACTTGACCTGTC GAATAACGCTCTCACCGGCGAAATCCCGCCGGAAATTTACGAGATGGTTCAGCTGACTCATCTCTATCTCCACAACAACACCCTGGACGGTTCAATTCCG TCTTCAATCGGAAATCTCACCAGGTTGAAGGAACTTGCAATCTACCACAACAACTTCCACGGCAGGATTCCAAAGGAGATAGGAAAGCTTACGGATCTCG AATTGCTATTTCTCTACGACAATCAGTTTTCGGGAGATATCCCTGAAGAGATTGGGAACTGTTCCAGTCTGCAAATGGTTGATTTCTTCGGAAACCGTTT CACGGGCAGGATTCCTGGCAGTATGGGAAGGCTGAAAAGACTGAGTTTCCTTCACCTGAGACAGAACGAGCTCGTCGGCGAAATTCCTGCCGAACTGGGA GGGTGTGAACAGTTGACAATTCTGGACCTGGCGGATAATTACCTCTCTGATGGAATTCCTGACGCTTTGGGATCTCTGCTTGCTCTGCAACAGCTCATGC TATACAACAATTCTCTCACAGGTACGGTTCCTGATGCCATCTCCAATTTGAGGAACCTGACAAGGATCAACTTTTCCTACAACAGACTGAACGGCAGCAT CTCCCCCTTGTGCAGCTCGAGTTCCTTCCTATCGTTCGACATCTCAGATAATGCCTTCTCAGGGGAGGTCCCTTCTGAATTGGGTAACTCGCCCAATCTC GAAAGGCTGAGGCTTGGGAACAACAAGTTCACAGGTGGGATCCCTTGGACTTTGGGGAAGATCAGTGAGCTGTCTTTGCTAGACATCTCAGGAAACTTGC TTACAGGAGAGCTGCCATTACCACTAATGTTATGCAAGAATCTAACCCGCATCAATCTCGACAACAACCGGTTATCCGGTTCGATTCCTCCCTGGCTCGG ATCATTACCTCAGCTAGGTGAGCTGGAGCTGTCCGGGAATCAGTTCACGGGTCCTCTGCCTCCGGAGCTTTTCAAGTGTTCGAAACTGTTCCGTCTCTCC CTCGAAAACAATTTACTTAATGGAACGATCCCTTCCGAGATTGGTAACCTGGGGGATTCCCTAAAAAATCTGACACTGAGCCACAATCAGTTCTCGGGAT CGATTCCTGCCTCGATTGGTAACCTGACCAACTTGGTGCAGCTCAGGTTGTCTCATAACATCTTCACTGGAAAAATTCCTGTGGAGATTGGAAAGCTGAA GTTTCTCATGGACATAGTAGACCTGAGCTGTAATAACCTGACCGGTTCGATCCCGCCAGCCATTGGAACCTTACCGACACTCGAAGCTCTTAATCTTTCG AGCAATGATCTCGAAGGAAGACTCCCGCCCCAAATCGCAAACATGGTGAGTTTGGTCAGTTTAGATGTGTCCTACAATCATCTGGTTGGGAAATTAGGTG ACCGGTTCGATCGTTGGTCGGCCGATTCGTTTCGAGGAAACCTGAAGCTGTGTGGAGGCCCTCTTGATACTCGTTGTTCCGAATCGGTTAGTAGTAATAA CCATTCCAGGTTGAGTGCAGCTGCTGTTATATCGCTATCCGCAATCACAACATTGGCTGCGATCGCTCTACTGGGACTCGGACTTGTGTTATTCTGCCGA AGAAGGAATGAGTATATGAGGAGTAAGAGTGAAGTAAGCTGCATTTACTCTTCGAATTCTTCGCGGCCGTTCTTTGGGAATGCTGCTGGTATGAAGAAGG AGATCAGGTGGGATGATATAATGGAAGCTACGAATCATCTCAGTGAGGAGTTTGTGATCGGGTCAGGAGGATCAGGAACCATCTACAGAGCCGAGTTAAG AAACGGGGAGATTGTTGCGGTCAAGAAGGTTCCGTGGAGAGACGAGCTAATGTTCAACAAGAGCTTCGCGAGGGAAGTGAAGACTCTGGGCAGGATTCGA CACAGACATCTGGTGAAGCTGGTGGGATACTGCTGCAATAGAGGAGCTGGGTGTAATCTGTTGGTTTATGAGTATATGCAGAATGGTAGCTTGTGGGATT GGCTGCATAAGCAGCCACGTAAGTTGAGTCTGGATTGGGAAGTGAGGTTGCGAATTGCTGCCGGGTTAGCCAAGGGTGTGGAGTACCTTCACCATGACTG TGTCCCGAGCATTGTACATCGAGATATCAAGTCGAGTAATCTGCTTCTTGACGCGGATATGGAATCACATCTTGGTGATTTCGGACTGGCTAAGACGGTG GTGGAGTTCTACGACTCCACCACCGGTACAAGTACCGAATCAAACTCGTTGTTTGCTGGGTCTTATGGATACATTGCGCCAGAATATGCTTATTCGTTGA AGGCGACAGAGAAGAGCGATGTGTTCAGCATGGGGATAGTGATGATGGAGCTTGTGACGGGGAAAGCTCCAACAGATTCGGTGTTTGGATATGATATGGA TATGGTGAGGTGGGTGGAGAAACAGATGGAGATGGGAGGATCTGGGCGGGAAGAGCTGATTGATTCTTCATTGATGCCGATGCTGCCTGGGGAAGAAAGT GCGGCATATCGAGTTCTTGAGATTGCATTGCAGTGCACTACTACTGCCCCACAAGGACGGCCATCGTCTAGGCAAGCTTGCGACCAGCTGATGCATTTGT TGAAGAATCGGAAGGTGGATTCCCAGAAAAGTGTGGTGGATCCTTAA
AA sequence Show only first row Show all	>Lus10036251 pacid=23169384 polypeptide=Lus10036251 locus=Lus10036251.g ID=Lus10036251.BGIv1.0 annot-version=v1.0 MEFLHLLAAVLLLLSLTGSVTSRNHDLEALLKVKESLISGEASFLTDWNRTINPNFCKWTGVTCGPGRVVTGLNLSDSSLSGSIPPEIGRLRNLLHLDLS SNSLTGPIPTTLVNLSALESLLLYSNQLTGRIPDQLGSLLKLRVVRIGNNYLTGGIPDSLGNLHQLVTLGLASCSLTGIIPPRLGRLGRIEELILQDNQL EGPIPSELGNCSNLTHIVLGQNNLNGTIPSQLGRLRNLENLNLVNNSFLSGEIPSPLGSLTQLLYLNLAGNQLEGPIPTSLAQLGNLNNLDLSFNKLTGE IPDEFFSGMGQLLYLALSSNNLTGVLPRGICANKTNLLKLILSETQLTGSIPGELVNCRALEQLDLSNNALTGEIPPEIYEMVQLTHLYLHNNTLDGSIP SSIGNLTRLKELAIYHNNFHGRIPKEIGKLTDLELLFLYDNQFSGDIPEEIGNCSSLQMVDFFGNRFTGRIPGSMGRLKRLSFLHLRQNELVGEIPAELG GCEQLTILDLADNYLSDGIPDALGSLLALQQLMLYNNSLTGTVPDAISNLRNLTRINFSYNRLNGSISPLCSSSSFLSFDISDNAFSGEVPSELGNSPNL ERLRLGNNKFTGGIPWTLGKISELSLLDISGNLLTGELPLPLMLCKNLTRINLDNNRLSGSIPPWLGSLPQLGELELSGNQFTGPLPPELFKCSKLFRLS LENNLLNGTIPSEIGNLGDSLKNLTLSHNQFSGSIPASIGNLTNLVQLRLSHNIFTGKIPVEIGKLKFLMDIVDLSCNNLTGSIPPAIGTLPTLEALNLS SNDLEGRLPPQIANMVSLVSLDVSYNHLVGKLGDRFDRWSADSFRGNLKLCGGPLDTRCSESVSSNNHSRLSAAAVISLSAITTLAAIALLGLGLVLFCR RRNEYMRSKSEVSCIYSSNSSRPFFGNAAGMKKEIRWDDIMEATNHLSEEFVIGSGGSGTIYRAELRNGEIVAVKKVPWRDELMFNKSFAREVKTLGRIR HRHLVKLVGYCCNRGAGCNLLVYEYMQNGSLWDWLHKQPRKLSLDWEVRLRIAAGLAKGVEYLHHDCVPSIVHRDIKSSNLLLDADMESHLGDFGLAKTV VEFYDSTTGTSTESNSLFAGSYGYIAPEYAYSLKATEKSDVFSMGIVMMELVTGKAPTDSVFGYDMDMVRWVEKQMEMGGSGREELIDSSLMPMLPGEES AAYRVLEIALQCTTTAPQGRPSSRQACDQLMHLLKNRKVDSQKSVVDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10036251 [exp]	0	1
AT1G62560		FMOGS-OX3 ,FMO ...	flavin-monooxygenase glucosino...		Lus10024609 [exp]	2.0	0.9584
AT1G68710			ATPase E1-E2 type family prote...		Lus10035068 [exp]	2.8	0.9573
AT1G61590			Protein kinase superfamily pro...		Lus10034757 [exp]	7.5	0.9567
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001108 [exp]	11.0	0.9397
AT3G26170		CYP71B19	"cytochrome P450, family 71, s...		Lus10018261 [exp]	11.1	0.9519
AT2G18150			Peroxidase superfamily protein...		Lus10028337 [exp]	13.1	0.9448
AT5G42655			Disease resistance-responsive ...		Lus10032310 [exp]	14.0	0.9510
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10032745 [exp]	16.8	0.9505
AT5G66040		STR16	sulfurtransferase protein 16 (...		Lus10021227 [exp]	16.9	0.9184
AT3G14470			NB-ARC domain-containing disea...		Lus10011278 [exp]	17.2	0.9438

Compare expression of checked genes

Lus10036251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.