Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57910 84 / 2e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022161 [exp] 408 / 2e-145 AT5G57910 110 / 3e-29 unknown protein Lus10036591 [exp] 187 / 9e-59 AT5G57910 117 / 4e-32 unknown protein Lus10035808 [exp] 177 / 1e-54 AT5G57910 116 / 6e-32 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G183000 [exp] 162 / 1e-48 AT4G30630 105 / 2e-27 unknown protein Potri.018G105300 [exp] 117 / 4e-32 AT5G57910 102 / 8e-27 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036255 pacid=23169326 polypeptide=Lus10036255 locus=Lus10036255.g ID=Lus10036255.BGIv1.0 annot-version=v1.0 ATGAAGAGGATGAGTAAGGGTCTTGCTGTTTTTCCTGCTCCTTCATCTGCTACTACTTCGTACGAGGATCCCAGGATCAGATTCAAGCGTGAGAGCCTTT TGCAGGACTATGATGAATTGTTAAAGGATACAGAAGCAAAGAGGAAGAGAATGGAAGTTATGAGAAAGAAGAAAATGACTCTAATGGCTGAAGTGAAATT CTTGAGGCGCAAGTTTAGTCACTTGGTAGAAAACCAGATACCTCAGAAGCTTAAGCCGGATCAAAGTCTGTTGCAATCAGAGATGAAGCGTAAGAAAGTT AGCAACAAGGGAAGGATGAAAAACTCCATTAGCCACGATTCGAGTCAGCCAGCTCAGATATTTGACTTGAACCGGAAGGGTAGGGTGATGCATAGTGGGA AGGAATCTGTTAAACAAAATAGGTGTCACAAGGGAAGAAGAGAAGCTGCATTGAGAAATTCGGGGATGATTCCTGACCTTCATGTGAAGGAGAGGAAGGA TGTCGGTGTTGTAAACAATGCCCCATTTTTCGACTTGAACCAGATATCGGTAAAGAATCAGTTCTATTCGCAAACTATTATGAATCAAGGTTTTGACTTC ATTCGACATAATAATGTTGATTCACCAACGTCATTGCAGATGGAAGAGGAAGAATTGCAGAGCAGTGGGGAGATGATGAATTCGTTGCGAGGAGGGATTG ATGAGCGACATGTACACAAGGATGACAAGTTATTTGGTTGTAGGAACATGGGGAATGGGTCTAGCCGGGAAGGGAAAAGGAAGATATCATGGCAGGACCC AGTCGCCTTAAGGGTGTGA
AA sequence Show only first row Show all	>Lus10036255 pacid=23169326 polypeptide=Lus10036255 locus=Lus10036255.g ID=Lus10036255.BGIv1.0 annot-version=v1.0 MKRMSKGLAVFPAPSSATTSYEDPRIRFKRESLLQDYDELLKDTEAKRKRMEVMRKKKMTLMAEVKFLRRKFSHLVENQIPQKLKPDQSLLQSEMKRKKV SNKGRMKNSISHDSSQPAQIFDLNRKGRVMHSGKESVKQNRCHKGRREAALRNSGMIPDLHVKERKDVGVVNNAPFFDLNQISVKNQFYSQTIMNQGFDF IRHNNVDSPTSLQMEEEELQSSGEMMNSLRGGIDERHVHKDDKLFGCRNMGNGSSREGKRKISWQDPVALRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57910			unknown protein		Lus10036255 [exp]	0	1
AT1G25260			Ribosomal protein L10 family p...		Lus10001072 [exp]	1.4	0.8906
AT5G46030			unknown protein		Lus10025438 [exp]	2.4	0.8686
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10041796 [exp]	4.2	0.8420
					Lus10011739 [exp]	4.4	0.8209
AT4G37020			unknown protein		Lus10000435 [exp]	5.2	0.8611
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10037615 [exp]	7.7	0.8489
AT3G05400			Major facilitator superfamily ...		Lus10029970 [exp]	8.8	0.8338
AT4G27280			Calcium-binding EF-hand family...		Lus10039724 [exp]	8.9	0.8343
AT5G63060			Sec14p-like phosphatidylinosit...		Lus10039952 [exp]	9.8	0.8160
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10000601 [exp]	11.7	0.8366

Compare expression of checked genes

Lus10036255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.