Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24050 145 / 4e-38 eIFiso4G2 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1) AT5G57870 140 / 1e-36 eIFiso4G1 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) AT1G62410 84 / 2e-18 MIF4G domain-containing protein (.1) AT3G60240 77 / 3e-15 CUM2, EIF4G CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035813 [exp] 162 / 3e-45 AT5G57870 654 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10022168 [exp] 165 / 4e-45 AT5G57870 976 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10036594 [exp] 162 / 2e-44 AT5G57870 625 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10010782 [exp] 142 / 3e-37 AT5G57870 952 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10028156 [exp] 97 / 2e-21 AT3G60240 1275 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Lus10042856 [exp] 96 / 2e-21 AT3G60240 970 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Lus10021744 [exp] 62 / 2e-11 ND / Lus10030123 [exp] 62 / 4e-11 ND / Lus10036316 [exp] 62 / 1e-10 ND 42 / 4e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G104100 [exp] 164 / 7e-45 AT5G57870 882 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.006G182100 [exp] 156 / 6e-42 AT5G57870 884 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.006G265300 [exp] 149 / 1e-39 AT5G57870 790 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.018G017600 [exp] 147 / 4e-39 AT5G57870 809 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.014G052600 [exp] 89 / 5e-19 AT3G60240 998 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Potri.002G140200 [exp] 88 / 9e-19 AT3G60240 942 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02854 [flax] [poplar] MIF4G MIF4G domain
Representative CDS sequence Show only first row Show all	>Lus10036256 pacid=23169324 polypeptide=Lus10036256 locus=Lus10036256.g ID=Lus10036256.BGIv1.0 annot-version=v1.0 ATGAACAACGAAACGCTGCAGCGGGAGCTGGAGAAGGCCAGAATGAAGATGACCATCCTTGCTGAAGAGATTTCGGTTCAGTGGGAGCTTCTTGCTGAGG CAGAGCAAACTCCTTGGCTGTTTGGATTTATTCATCCTAAATCGAACGACCGTACAAAGGCCGTGGAAATTATCCCCAAACAACCTCCTCTCGCTATTGT CAAAGCTGAAACGCCATTGACTACAGATTCTGACCATAAATACTGCGATTCTCGACAAAAGAAAATCCAGAAAAGTCTGATCTTCTCAAGGACGTTGGCT GATTCAGCTATCACATCAGCTGTTATTTTGGAGAGTATGGTGTCTGTAATTTTTGAAAAGGCAGTGATGGAATCTCCTAATCCATCTTGCTGCTCCATTA ATATGTATGCCAAGCTATGTTCTGATCTCGAGGACAAGCTTTCATCATTCCCAACAACAACATTCAAGAGAGCCCTCTTGAAAAAGTGTCAAGAAGCATA CGAGAGTAATTCAAAGATTCTCAATAACCTTGGAATTATACGTTTCATTGGCGAGCTATTTAAGCACAAGATGTTTCCGGAGAGGATTCTTCATCAAATT GTTCTTCAGGCTAGTCCCGGGGAAGGAAACGTTGAAGCCATTTGCGATTTACTCAATAGAATTGGCAAGCACCTTGACGATTCCCCGAAATCACGGCCTG CTAATGATGTTTACTTCGGCTTTGTGAAAGGGCTTGCTTCAAATCCTCAACTCACTCCATGTTTAAAGCTAATGTGGTCTATCCTAAAAACGGGTTATTT TGAACATTTTGGTTCACATAACATGGAAGAGGCCTATCATTATGCCGGACACAACAACGAAGATGATGTAGCCGAAAATGAGGTGGTCAACGAGGTTGAC TACATGCCTAAAAACAACCTTGAGGCAGGGGATGGTGAGGCCTCGGTAGAGGATGACGGCAGCATGCCTATTGGCCTACTCAATCTAGAAGGGGATGATG CTGATGTAGCCATGCTTATGCAGTTTGCAACCAGATCAACCAACCCTTACCGGTACATGTATCTTATGTTCTAG
AA sequence Show only first row Show all	>Lus10036256 pacid=23169324 polypeptide=Lus10036256 locus=Lus10036256.g ID=Lus10036256.BGIv1.0 annot-version=v1.0 MNNETLQRELEKARMKMTILAEEISVQWELLAEAEQTPWLFGFIHPKSNDRTKAVEIIPKQPPLAIVKAETPLTTDSDHKYCDSRQKKIQKSLIFSRTLA DSAITSAVILESMVSVIFEKAVMESPNPSCCSINMYAKLCSDLEDKLSSFPTTTFKRALLKKCQEAYESNSKILNNLGIIRFIGELFKHKMFPERILHQI VLQASPGEGNVEAICDLLNRIGKHLDDSPKSRPANDVYFGFVKGLASNPQLTPCLKLMWSILKTGYFEHFGSHNMEEAYHYAGHNNEDDVAENEVVNEVD YMPKNNLEAGDGEASVEDDGSMPIGLLNLEGDDADVAMLMQFATRSTNPYRYMYLMF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24050		eIFiso4G2	eukaryotic translation Initiat...		Lus10036256 [exp]	0	1
AT5G66550			Maf-like protein (.1)		Lus10036572 [exp]	1.0	0.9414
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10004343 [exp]	9.5	0.7183
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10035525 [exp]	10.1	0.8803
AT4G37740	GRF	ATGRF2	growth-regulating factor 2 (.1...		Lus10008916 [exp]	12.9	0.7275
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10033427 [exp]	13.1	0.8697
AT5G38530		TSBtype2	tryptophan synthase beta type ...		Lus10012746 [exp]	14.1	0.7800
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10036832 [exp]	16.7	0.8664
					Lus10030912 [exp]	18.3	0.8614
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10019195 [exp]	21.1	0.8594
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10015190 [exp]	21.5	0.8452

Compare expression of checked genes

Lus10036256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.