Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30580 338 / 6e-115 LPAT1, ATS2, EMB1995 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1) AT3G05510 54 / 9e-08 Phospholipid/glycerol acyltransferase family protein (.1.2) AT1G80950 50 / 1e-06 Phospholipid/glycerol acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022158 [exp] 647 / 0 AT4G30580 331 / 5e-111 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1) Lus10020650 [exp] 52 / 3e-07 AT3G05510 438 / 1e-150 Phospholipid/glycerol acyltransferase family protein (.1.2) Lus10003950 [exp] 49 / 5e-06 AT1G80950 492 / 4e-174 Phospholipid/glycerol acyltransferase family protein (.1) Lus10032706 [exp] 48 / 5e-06 AT1G80950 378 / 5e-130 Phospholipid/glycerol acyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G183700 [exp] 399 / 5e-139 AT4G30580 388 / 2e-134 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1) Potri.011G138900 [exp] 71 / 8e-14 AT4G30580 73 / 2e-14 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1) Potri.005G025400 [exp] 47 / 1e-05 AT3G05510 529 / 0.0 Phospholipid/glycerol acyltransferase family protein (.1.2) Potri.002G134100 [exp] 44 / 0.0002 AT1G80950 476 / 1e-167 Phospholipid/glycerol acyltransferase family protein (.1) Potri.004G183300 [exp] 43 / 0.0003 AT5G60620 686 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Potri.014G042200 [exp] 42 / 0.0005 AT1G80950 506 / 7e-180 Phospholipid/glycerol acyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10036259 pacid=23169353 polypeptide=Lus10036259 locus=Lus10036259.g ID=Lus10036259.BGIv1.0 annot-version=v1.0 ATGGACATCGCTTCTCCGCCTTTCCACTCGTCTCCTCGTCCATGTTATGGAAGATGGAGTTCTTCTGCTTTATCCCTCTCAGTGCCGTTCTCATCATGTA AGGGACCGTACAATATCAAGCTTCCAGCTTTGATGAGTACTACTACCTCTGCGCTAAGTTGTTTTTCATGTAGTTCAAGGAAGCTCTCAGCTGTCCCTTG GCGTTCTTATTCTGAAGAGCAGTTCAACAGACCATATCCCGTTTGTAGTAAACTATGGACACCTAGTAAGCCGTCCATTCGGACTGTCATATGGTCTGAA CTTGCTGGTTCTGGGATTACTGATATTGATCCACATCCATCATCTGAAGTTAGCCTGATCTCAAGAGTGAGAGGATTTGGATTTTACACAGTCACCGCCA TTGCTGCAATGTTTCTAATTGTGGTGATGGTGGCTCAACATCTTGCTGTGCTTTCCTTTGACCGATACAGAAGAAAAGCTCATCATTTTATTGCCAGTCT ATGGGCGAAAATAGCAGTGACACCTTTTCTAAACATTGAGTTTGTGGGAGTGGAGAATCTGCCACCTGCAGACTCTCCAGCAGTGTATGTTTCCAACCAC CAGAGCTTCCTAGATATATACACTCTTCTCACTATGGGAAGATGCTTCAAGTTCATTAGCAAGACGTCCATTTTTCTGTACCCAATTATTGGATGGGCGA TGTCCATGCTTGGTACGATTCCCTTGAAGCGCATGGACAGCAGAAGCCAGTTGGAATGTCTTAAACGATGCATTGACTTGGTGAATAAGGGTGCATCTGT GTTCTTCTTCCCAGAGGGAACTCGTAGTAAAGATGGGAAATTGGGTGCTTTCAAGAAAGGAGCATTCAGCGTTGCAGCAAAAACAGGAGCGCCAGTCATC CCAATGACGATAATGGGAACTGGAGGAATCATGCCTCCAGGAAAAGAGGCCATCTTGAATATAGGTTCCGTAAAAGTTGTCATTCACAAGCCATTACAAG GAAATGATGCTGCAGTTCTGTGCGATGGAGCCAGAACATTAATTGCAGGTCCTCTCATTAACCAGCAAAGCTAA
AA sequence Show only first row Show all	>Lus10036259 pacid=23169353 polypeptide=Lus10036259 locus=Lus10036259.g ID=Lus10036259.BGIv1.0 annot-version=v1.0 MDIASPPFHSSPRPCYGRWSSSALSLSVPFSSCKGPYNIKLPALMSTTTSALSCFSCSSRKLSAVPWRSYSEEQFNRPYPVCSKLWTPSKPSIRTVIWSE LAGSGITDIDPHPSSEVSLISRVRGFGFYTVTAIAAMFLIVVMVAQHLAVLSFDRYRRKAHHFIASLWAKIAVTPFLNIEFVGVENLPPADSPAVYVSNH QSFLDIYTLLTMGRCFKFISKTSIFLYPIIGWAMSMLGTIPLKRMDSRSQLECLKRCIDLVNKGASVFFFPEGTRSKDGKLGAFKKGAFSVAAKTGAPVI PMTIMGTGGIMPPGKEAILNIGSVKVVIHKPLQGNDAAVLCDGARTLIAGPLINQQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30580		LPAT1, ATS2, EM...	lysophosphatidic acid acyltran...		Lus10036259 [exp]	0	1
AT5G04490		VTE5	vitamin E pathway gene 5 (.1)		Lus10017447 [exp]	3.5	0.7694
AT2G17240			unknown protein		Lus10043214 [exp]	10.2	0.7300
AT4G28706			pfkB-like carbohydrate kinase ...		Lus10011270 [exp]	12.6	0.7578
AT4G30900			DNAse I-like superfamily prote...		Lus10022154 [exp]	21.7	0.7500
AT5G10460			Haloacid dehalogenase-like hyd...		Lus10005305 [exp]	29.6	0.7226
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013076 [exp]	29.7	0.7194
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10038308 [exp]	30.4	0.6998
AT4G03090			sequence-specific DNA binding;...		Lus10024746 [exp]	31.7	0.7273
AT1G22140			unknown protein		Lus10025627 [exp]	33.8	0.7484
AT5G58005			Cytochrome c oxidase, subunit ...		Lus10036285 [exp]	35.7	0.7117

Compare expression of checked genes

Lus10036259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.