Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57940 1048 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT2G23980 1031 / 0 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT4G30560 1029 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT1G19780 956 / 0 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT1G15990 944 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT5G53130 738 / 0 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT1G01340 699 / 0 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2) AT4G01010 686 / 0 ATCNGC13 cyclic nucleotide-gated channel 13 (.1) AT2G28260 671 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT4G30360 667 / 0 ATCNGC17 cyclic nucleotide-gated channel 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022155 [exp] 1296 / 0 AT4G30560 1095 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10024073 [exp] 955 / 0 AT1G19780 1033 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10041662 [exp] 954 / 0 AT1G19780 1056 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10019014 [exp] 734 / 0 AT5G53130 1122 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10003395 [exp] 714 / 0 AT5G53130 1117 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10015510 [exp] 687 / 0 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10014925 [exp] 682 / 0 AT5G53130 1031 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10023203 [exp] 677 / 0 AT4G30360 1002 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10019983 [exp] 676 / 0 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G106100 [exp] 1123 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.003G183000 [exp] 978 / 0 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.001G043900 [exp] 945 / 0 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.012G002200 [exp] 750 / 0 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.015G019100 [exp] 746 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.018G097600 [exp] 698 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.002G170000 [exp] 696 / 0 AT1G01340 909 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.014G097900 [exp] 687 / 0 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.009G010700 [exp] 662 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G009200 [exp] 647 / 0 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10036260 pacid=23169391 polypeptide=Lus10036260 locus=Lus10036260.g ID=Lus10036260.BGIv1.0 annot-version=v1.0 ATGACGTTTTGCTCTGGTTGTGTCCATTTGGTTTGCTCAACTGGTTTCCGGTTCGAGTTGGTTGTAACTACTTATTCCCAACAGCCAATGTGTTGGCGTG AAAGGTGTCGTAGATTATATGGGCACTCCCCTCTCAGCCAGAGTCAACTTCAGGACCGGATTCAGTTTAGCCATGCCAACAAGAGTGCTCGACTTTTCCT TGTTTTCTTCCGCTTGTTTGGGTTCTTTCTATTTTGTTTTGTTTTTGTTGTTTGGGTTCAGGTCTCTCGCCTGTTTGGCGATCTGCTTGGGTTGCTACAA ACACTGGACACCTTGATGATAAGAGAGATAGTAGATCATGCTTTCCTGCTCTTTTCGCTTGGCGGTTTATGTTTTGACAATGAGAATTTATGCCTTCCTT GTAGCTTAAAACTCAATAAAGCTTACTTTCTCCTTGTCAATGGAGGATATAGTTTACTGGATGATTTGGACTCAAGAGTATCATCATCACCATCCGAGGC AGGGCTAAGAAGATGCGGATTTGGCATTGAAGCACTAACATGTGCTGGTCAGCCACCAGACACACCATCCAGATCTTTCAAGAGAGGGATAAAGAAAGGT TCCGAAGGACTCAAGTCCATCGGTCGATCCCTTCGATTCGGAGTCACTCGTGCTGTCTTCCCGGAAGATCTCAAAGTTTCAGAGAAGAAGATATTCGATC CACAGGACAAATTCCTGCTGCTGTGCAATAAGCTCTTTGTGGTGTCCTGCATTTTGGCTGCGTTTGTTGATCCACTCTTCTTTTACCTCCCGGTGTTCAA TGATAATGGGTTTTGCCTTGGGATTGATCGCAAGTTAGCACATACAGTGTCAACGTTGAGGACCGTTGTTGATGTTTTCTACCTTGCTCGCATGGCTCTT CAGTTTCGGACGGCTTACATTGCTCCTTCCTCGAGGGTGTTTGGACGTGGGGAACTAGTGATTGATCCTGCTCAAATAGCTAAGCGCTACATGCTCAGAT ACTTCTTGATTGATTTCCTTGCTGTCTTCCCCTTACCTCAGATTGTGGTCTGGAAGTTTCTTAACAGCTCACAAGGCTCCGATGTCCTAACGACGAAAAG GGCTCTCCTTTGCATTATTTTGATCCAATACATTCCTAGGTTTCTTCGGTTTCTGCCCATAACTTCAGAGCTTAAAAGAACAGCAGGTGTCTTTGCAGAG ACTGCTTGGGCAGGTGCTGCGTGTTATCTGCTACTTTACATGCTTGCAAGTCATGTTGTTGGTGCATTATGGTACTTGCTAGCCATAGAAAGGAAAGACT CATGCTGGCAAAAGGCTTGTACCCCCGATGCAAAATGTCAAATGAATTTCTTGTACTGTGGAAACCAGTTCTTGCAAGGCTTTGATGCATGGAGCTCATT GCGGAACGACACTCTTGAAAATAATTGCAAAACAGAAGAAGATGGACCGTTTGACTATGGAATCTTCTTAAATGCTTTGTCTTCAGGTGTTGCCTCTTCG AAGGAGTTCATTGCTAAATATTGCTATTGTCTGTGGTGGGGACTTCAGAACTTGAGTACACTAGGTCAGGGTCTTCAAACCAGCACATATCCAGGAGAGG TTATTTTCTCTATAGCACTCGCAATATTTGGACTAATCCTCTTCGCACTTCTCATTGGTAACATGCAGACCTATCTTCAATCACTTACGATACGTCTGGA AGAAATGAGGGTGAAGAGGCGAGACTCAGAGCAGTGGATGCGTCATCGCTTGCTTCCAACAGAGCTCAAGGAGAGGGTTAGGCGGTACGACCAATACAAG TGGCTGGCAACTCGTGGAGTTGATGAAGAGAGCTTGGTTCAGAGCCTCCCTAAGGATCTTAGGAGAGACATCAAACGACATCTTTGTTTGGCTTTAGTCC GGCGGGTTCCTCTATTTGAAAACATGGATGAAAGACTCCTTGATGCAATATGTGAGCGGCTGAAGCCATGCTTATTCACAGAATCAACTTACATGGTTAG AGAAGGAGATCCGGTGGACGAAATGCTCTTCATCATCCGGGGTAGACTCGAGAGTGTTACTACAGATGGTGGGAGGAGTGGCTTCTTCAACCGCAGTTTC CTCAAAGAAGGAGATTTCTGCGGGGAGGAGCTCTTAACATGGGCGCTTGATCCCAAATCAGGAGGAAACTTACCATCTTCTACTAGAACTGTGAGGGCAA TCACTGAAGTTGAGGCCTTTGCACTGATTGCTGACGAATTGAAATTCGTAGCAAGTCAGTTCAGAAGGTTGCACAGCAGGCAAGTGCAGCACACGTTCAG GTTCTACTCTCAGCAGTGGAGAACTTGGGCTGCTTGTTTTATACAGGCAGCCTGGAGAAGATATACTAAGAGGAAAAACACGGAGCAGCGTCGCAAGGAA GAAGAGGAGGAGGATGGCGAAACAGTGGCTGAAGAAGCATCAGAATCATCGGCTCGAAGCAGTAATGTTGGAGCAGGAGGATCATACAGTATAGGAGCTA CGTTTTTGGCATCAAGGTTTGCAGCGAATGCACTTCGTGGGGTTCATAGGAACAGGAATGCCAAGACTGCTAGGGAATTGGTGACACTTCAGAAGCCTCC TGAACCAGATTTCACGGCTGACGATGCTTGA
AA sequence Show only first row Show all	>Lus10036260 pacid=23169391 polypeptide=Lus10036260 locus=Lus10036260.g ID=Lus10036260.BGIv1.0 annot-version=v1.0 MTFCSGCVHLVCSTGFRFELVVTTYSQQPMCWRERCRRLYGHSPLSQSQLQDRIQFSHANKSARLFLVFFRLFGFFLFCFVFVVWVQVSRLFGDLLGLLQ TLDTLMIREIVDHAFLLFSLGGLCFDNENLCLPCSLKLNKAYFLLVNGGYSLLDDLDSRVSSSPSEAGLRRCGFGIEALTCAGQPPDTPSRSFKRGIKKG SEGLKSIGRSLRFGVTRAVFPEDLKVSEKKIFDPQDKFLLLCNKLFVVSCILAAFVDPLFFYLPVFNDNGFCLGIDRKLAHTVSTLRTVVDVFYLARMAL QFRTAYIAPSSRVFGRGELVIDPAQIAKRYMLRYFLIDFLAVFPLPQIVVWKFLNSSQGSDVLTTKRALLCIILIQYIPRFLRFLPITSELKRTAGVFAE TAWAGAACYLLLYMLASHVVGALWYLLAIERKDSCWQKACTPDAKCQMNFLYCGNQFLQGFDAWSSLRNDTLENNCKTEEDGPFDYGIFLNALSSGVASS KEFIAKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMRHRLLPTELKERVRRYDQYK WLATRGVDEESLVQSLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTESTYMVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSF LKEGDFCGEELLTWALDPKSGGNLPSSTRTVRAITEVEAFALIADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYTKRKNTEQRRKE EEEEDGETVAEEASESSARSSNVGAGGSYSIGATFLASRFAANALRGVHRNRNAKTARELVTLQKPPEPDFTADDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30560		ATCNGC9	cyclic nucleotide gated channe...		Lus10036260 [exp]	0	1
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10025358 [exp]	3.2	0.8941
AT1G18835	ZF_HD	MIF3	mini zinc finger 3, mini zinc ...		Lus10002058 [exp]	5.7	0.8715
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022189 [exp]	10.4	0.8724
AT4G38640			Plasma-membrane choline transp...		Lus10025051 [exp]	13.0	0.8368
AT2G16900			Arabidopsis phospholipase-like...		Lus10012164 [exp]	14.0	0.8174
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10033099 [exp]	15.6	0.8654
AT1G31940			unknown protein		Lus10012117 [exp]	16.2	0.8615
AT1G17080			Ribosomal protein L18ae family...		Lus10013712 [exp]	16.5	0.8556
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10035481 [exp]	18.2	0.8544
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10028075 [exp]	24.9	0.8184

Compare expression of checked genes

Lus10036260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.