Plant FIBer expression Database

Lus10036262 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G30900 270 / 9e-92 DNAse I-like superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022154
[exp]
308 / 2e-107 AT4G30900 429 / 6e-153 DNAse I-like superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G184300
[exp]
284 / 3e-97 AT4G30900 550 / 0.0 DNAse I-like superfamily protein (.1.2)
Potri.018G106700
[exp]
271 / 3e-92 AT4G30900 541 / 0.0 DNAse I-like superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0530 DNase_I-like PF03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence
>Lus10036262 pacid=23169400 polypeptide=Lus10036262 locus=Lus10036262.g ID=Lus10036262.BGIv1.0 annot-version=v1.0
ATGGATGAGTCAAGTCCTCGTGCCAGAAGACGAAGTGCTTTGCTTACTTGGCAGCATATCGCGTCCTTACCTCCTAGCCTGCCAGTAGTTTACTGCGGAG
GGTTTAACACTCAAAAGGAATCAACCACAGGACGTTTTCTTCTTGGTAGATCAAGAGAGCATGGTTCGATGGGAGACATGAAGGACACATGGGCCAATGC
TCGAGTAAGGAAAAATATGTCGCTGATACGCACATATCACGGATTCAAAGGTAACAAGCAAGGAGCCCTTGAATTCGTGAAGTTGATCTTCAGGGCATTG
TGTCTTTGCTGGGACAGACAAACTCAGGACCTCCATGTAGATTGGATTCTCTACAGGGGGAGATCTTTAATCCCATCTCTATGTGAAGTTGTGAGTGATA
ACGTTGATGGCTACTACCCTTCCTCTCACTACCCGATTTTCGCAGAATTCATGCTTCCACGTTCTGTCAGACTTGCCGAACCAGCAGCAGCAGCAGGACC
TGAGCAAGCTTCATCTTGA
AA sequence
>Lus10036262 pacid=23169400 polypeptide=Lus10036262 locus=Lus10036262.g ID=Lus10036262.BGIv1.0 annot-version=v1.0
MDESSPRARRRSALLTWQHIASLPPSLPVVYCGGFNTQKESTTGRFLLGRSREHGSMGDMKDTWANARVRKNMSLIRTYHGFKGNKQGALEFVKLIFRAL
CLCWDRQTQDLHVDWILYRGRSLIPSLCEVVSDNVDGYYPSSHYPIFAEFMLPRSVRLAEPAAAAGPEQASS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G30900 DNAse I-like superfamily prote... Lus10036262
[exp]
0 1
AT1G03330 Small nuclear ribonucleoprotei... Lus10000666
[exp]
2.8 0.8654
AT3G10850 GLY2, GLX2-2 GLYOXALASE 2-2, Metallo-hydrol... Lus10029086
[exp]
6.0 0.8626
AT5G35180 Protein of unknown function (D... Lus10019585
[exp]
8.7 0.8584
AT3G21510 ATHP3, AHP1 histidine-containing phosphotr... Lus10033999
[exp]
12.1 0.8740
AT1G04280 P-loop containing nucleoside t... Lus10021226
[exp]
23.4 0.8466
AT2G04845 Acyl-CoA N-acyltransferases (N... Lus10012349
[exp]
24.6 0.8065
AT1G02680 TAF13 TBP-associated factor 13 (.1) Lus10028629
[exp]
25.2 0.8507
AT5G61240 Leucine-rich repeat (LRR) fami... Lus10037108
[exp]
25.7 0.8486
AT4G27745 Yippee family putative zinc-bi... Lus10033226
[exp]
26.1 0.8439
AT1G17330 Metal-dependent phosphohydrola... Lus10040985
[exp]
27.9 0.8499

Lus10036262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.