Plant FIBer expression Database

Lus10036263 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G30900 201 / 3e-65 DNAse I-like superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022154
[exp]
195 / 3e-63 AT4G30900 429 / 6e-153 DNAse I-like superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G184300
[exp]
216 / 5e-71 AT4G30900 550 / 0.0 DNAse I-like superfamily protein (.1.2)
Potri.018G106700
[exp]
214 / 4e-70 AT4G30900 541 / 0.0 DNAse I-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10036263 pacid=23169444 polypeptide=Lus10036263 locus=Lus10036263.g ID=Lus10036263.BGIv1.0 annot-version=v1.0
ATGAGTGTTTCTATTACTGTAATGACCTTCAATCTGCATGAAGAAGATCAGGCGGAAGCGGGAGAGGATAGACCCAATTCATGGGAGAAGAGGCGAGATT
TATGTTTGAGCGTCATTACTAGTTACTCCCCTCTCATCCTTTGTACCCAACAAGGTGTTAAGTCACAGTTGGATTATCTTCAGCAAGGTTTGCCAGGTTA
TGATCAATTCGGAGTATCAAGGAAAGGATTTGAGGATAGTACAGATGAACACTGCACCATCTTATACGACAAGGAGAAGGTAAAAGTAGTAGAAGGTGGA
ACGTTTTGGTTATCGGAGTCTCCATCGGTCCCAGGAAGCATATCATGGGGCGGTTCAGTTCCTTGCATTGCAACTTGGGCGATATCCTTCCAACCCTCTT
ATCATAGTTTGTGTGTGTCATTGTCTGTTAACTCCTTGCTTTTCCTTGACATAGTGTCCACACATTCCAACTGA
AA sequence
>Lus10036263 pacid=23169444 polypeptide=Lus10036263 locus=Lus10036263.g ID=Lus10036263.BGIv1.0 annot-version=v1.0
MSVSITVMTFNLHEEDQAEAGEDRPNSWEKRRDLCLSVITSYSPLILCTQQGVKSQLDYLQQGLPGYDQFGVSRKGFEDSTDEHCTILYDKEKVKVVEGG
TFWLSESPSVPGSISWGGSVPCIATWAISFQPSYHSLCVSLSVNSLLFLDIVSTHSN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G30900 DNAse I-like superfamily prote... Lus10036263
[exp]
0 1
AT1G25570 Di-glucose binding protein wit... Lus10041488
[exp]
3.3 0.8014
AT1G27170 transmembrane receptors;ATP bi... Lus10015453
[exp]
9.8 0.7628
AT2G41705 camphor resistance CrcB family... Lus10028072
[exp]
13.4 0.7787
AT5G41480 EMB9, ATDFA, GL... GLOBULAR ARREST1, EMBRYO DEFEC... Lus10038824
[exp]
16.2 0.7927
AT1G06750 P-loop containing nucleoside t... Lus10021225
[exp]
16.4 0.7334
AT2G16460 Protein of unknown function (D... Lus10018079
[exp]
18.6 0.7898
AT1G34770 unknown protein Lus10033452
[exp]
19.1 0.7544
AT5G49950 alpha/beta-Hydrolases superfam... Lus10037325
[exp]
21.1 0.7746
AT1G79350 EMB1135 embryo defective 1135, RING/FY... Lus10001836
[exp]
23.2 0.7676
AT3G17920 Outer arm dynein light chain 1... Lus10041988
[exp]
27.2 0.7723

Lus10036263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.