Plant FIBer expression Database

Lus10036265 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42905 52 / 3e-08 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034950
[exp]
52 / 1e-08 AT5G42905 42 / 4e-05 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Lus10006008
[exp]
46 / 3e-07 AT5G42905 47 / 2e-07 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Lus10005922
[exp]
41 / 4e-05 AT5G42905 44 / 3e-06 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Lus10005051
[exp]
41 / 0.0003 AT3G51780 221 / 1e-69 BCL-2-associated athanogene 4 (.1)
Lus10000505
[exp]
38 / 0.0003 ND /
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0219 RNase_H PF00075 RNase_H RNase H
Representative CDS sequence
>Lus10036265 pacid=23169428 polypeptide=Lus10036265 locus=Lus10036265.g ID=Lus10036265.BGIv1.0 annot-version=v1.0
ATGGTGAGAACCAAGGTTAATTTTTGGCGGGCATTGATTACTAGTACCTGTTGTACTGCCTGTGCTTTAACTACAGGTACCGTTCGTCAGAATGTGGAGA
TTAAATGGAGAGCTGCAGCGGAGGTATGGACTAGTCGTATCACAAATGACTTGGTGCGAAACACGATGCGGAGCGTCTCTACAGGTGGTGTTTTACGGGA
CCATACGCGTAAGGTGCAGATGACATTCTCGGCAAACCTTGGAGATTGCACGATTACTAGGGTGGAGACTCACGGCGTGGTCATGGGCTTGGAGATAGCG
CGGCGCTCAGGATACTGTCGTGTGGAAGTTCAAATGGACTCGAAGTGTGTGGTGGATATATTAACGAGTGGGGCTACTAATCGCAGCCAACATGCTAGCC
CTGATTATGAAATTCCAGAGACTTCGGAAAAGAGATTAGGAGATCCGTATCATCCACGTTTACCACGAGGCAAATGGCTTCGCTGA
AA sequence
>Lus10036265 pacid=23169428 polypeptide=Lus10036265 locus=Lus10036265.g ID=Lus10036265.BGIv1.0 annot-version=v1.0
MVRTKVNFWRALITSTCCTACALTTGTVRQNVEIKWRAAAEVWTSRITNDLVRNTMRSVSTGGVLRDHTRKVQMTFSANLGDCTITRVETHGVVMGLEIA
RRSGYCRVEVQMDSKCVVDILTSGATNRSQHASPDYEIPETSEKRLGDPYHPRLPRGKWLR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G42905 Polynucleotidyl transferase, r... Lus10036265
[exp]
0 1
AT5G14180 MPL1 Myzus persicae-induced lipase ... Lus10015158
[exp]
4.6 0.9684
AT1G04670 unknown protein Lus10004041
[exp]
6.5 0.9684
Lus10006918
[exp]
7.9 0.9684
Lus10007508
[exp]
9.2 0.9684
AT5G60010 ferric reductase-like transmem... Lus10019390
[exp]
10.2 0.9684
AT3G53690 RING/U-box superfamily protein... Lus10042610
[exp]
11.2 0.9684
AT1G22440 Zinc-binding alcohol dehydroge... Lus10009516
[exp]
12.1 0.9684
Lus10040397
[exp]
13.0 0.9684
Lus10027066
[exp]
13.7 0.9684
AT2G25930 PYK20, ELF3 EARLY FLOWERING 3, hydroxyprol... Lus10006857
[exp]
14.5 0.9665

Lus10036265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.