Plant FIBer expression Database

Lus10036266 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G30920 749 / 0 AtLAP2, LAP2 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1)
AT2G24200 728 / 0 Cytosol aminopeptidase family protein (.1.2.3)
AT4G30910 695 / 0 Cytosol aminopeptidase family protein (.1)
AT5G13940 82 / 2e-16 aminopeptidases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022152
[exp]
806 / 0 AT4G30920 657 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1)
Lus10035823
[exp]
733 / 0 AT4G30920 776 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G106800
[exp]
782 / 0 AT4G30920 873 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1)
Potri.006G184500
[exp]
773 / 0 AT4G30920 835 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0223 MACRO PF02789 Peptidase_M17_N Cytosol aminopeptidase family, N-terminal domain
CL0035 Peptidase_MH PF00883 Peptidase_M17 Cytosol aminopeptidase family, catalytic domain
Representative CDS sequence
>Lus10036266 pacid=23169381 polypeptide=Lus10036266 locus=Lus10036266.g ID=Lus10036266.BGIv1.0 annot-version=v1.0
ATGGCGCATTCAGTTTCTAGTTCCACTCTCGGCCTCACTCAGCCCAACTCGATCGAACTCCCCAAGATCGCCTTCGCTGCGAAAGAGATTGATGCGGTTG
AATGGAAAGGAGATTTACTTGCGGTTGGTGTCACTGAGAAGGACATGACTAAGGACGAGACCTCAAAGTTTGAGAACTCACTTCTGAAGAAGATCGATGG
TCAATTGAGTGGTCTCTTAAGTGAAGCATCGTCTGAGGAGGATTTCTCAGGGAAAGCTGGCCAATCAATTGTTCTTAGACTTCCTGGTCTGAGCTCCAAA
AGGATAGGCTTGATTGGTCTTGGGAAATCGACTTCATCCACATTTGCTTTCCGTAATTTCGGTGAAGCTTTTGCTGCTGCTGCTAAGTCTACTCAAGCCA
ACAGTGCTGCCGTCACCCTTGCAACAACAGACAGCATCACAAATGACTATAAGCTCAACACTGCTTCAGCAATTGCTTCTGGTACTGTGTTGGGTTTGTA
CGAAGACAATCGGTACAAGTCAGAATCAAAGAAACCGGTTCTTAAATCTGTTGATCTAATTGGTCTTGGAAGTGGAGCTGAAATAGAGAAGAAGCTAAAA
TATGCTGAAGAGGTATCCACTGGGATCATTTTTGGGAAAGAACTTGTCAATTCCCCAGCTAATGTGCTCACCCCTGTTGTGCTGGCTGAGGAAGCTGCCA
ATATTGCTTCGACATACAGTGACGTTTTCACTGCTACTATCCTGGATGCCGAAAAGTGCGCAGAATTGAAAATGGGGTCTTATCTGGGTGTTGCTGCAGC
GTCCGCAAATCCGCCTCGTTTCATCCATCTCTGTTACAAGCCATCCAGTGGACCTGTTAAAACCAAGCTGGCATTGGTTGGAAAGGGTCTAACGTTCGAC
AGTGGTGGCTACAACATTAAGACAGGAGCAGGGTGTTCCATTGAGCTCATGAAATTCGACATGGGTGGTTCAGCTGCCGTTCTTGGTGCAGCCAAAGCCA
TAGGTCAAGTGAAACCTCCTGGAGTTGAGGTGAATAACACTGATGCTGAGGGTAGGCTTACACTTGCAGATGCGTTGGTGTATGCATGTAATCAGGGCGT
TGAGAAGATAATTGATCTGGCAACTTTAACTGGTGCCTGTGTAGTTGCTCTTGGGCCCTCGATTGCAGGTGTGTTTACACCAAGCGATGATCTGGCAAAG
GAAGTGTTCACAGCAGCAGAGGTGAGTGGGGAGAAGCTGTGGAGGATGCCATTGGAGGAAAGCTACTGGGAGAGCATGAAGTCAGGAGTAGCTGATATGG
TCAATACAGGTGGTCGTCAGGGAGGATCTATCACTGCTGCTCTATTTTTGAAACAGTTTGTGGATGAGAAAGTTGAATGGATGCACATTGACATGGCTGG
ACCGGTGTGGAACGACAAAAAGCGAGCTGCAACAGGATTCGGCATTGGAACCTTGGTGGAGTGGGTCTTACTCAACTCTTCTTCCTAG
AA sequence
>Lus10036266 pacid=23169381 polypeptide=Lus10036266 locus=Lus10036266.g ID=Lus10036266.BGIv1.0 annot-version=v1.0
MAHSVSSSTLGLTQPNSIELPKIAFAAKEIDAVEWKGDLLAVGVTEKDMTKDETSKFENSLLKKIDGQLSGLLSEASSEEDFSGKAGQSIVLRLPGLSSK
RIGLIGLGKSTSSTFAFRNFGEAFAAAAKSTQANSAAVTLATTDSITNDYKLNTASAIASGTVLGLYEDNRYKSESKKPVLKSVDLIGLGSGAEIEKKLK
YAEEVSTGIIFGKELVNSPANVLTPVVLAEEAANIASTYSDVFTATILDAEKCAELKMGSYLGVAAASANPPRFIHLCYKPSSGPVKTKLALVGKGLTFD
SGGYNIKTGAGCSIELMKFDMGGSAAVLGAAKAIGQVKPPGVEVNNTDAEGRLTLADALVYACNQGVEKIIDLATLTGACVVALGPSIAGVFTPSDDLAK
EVFTAAEVSGEKLWRMPLEESYWESMKSGVADMVNTGGRQGGSITAALFLKQFVDEKVEWMHIDMAGPVWNDKKRAATGFGIGTLVEWVLLNSSS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G30920 AtLAP2, LAP2 leucyl aminopeptidase 2, Cytos... Lus10036266
[exp]
0 1
AT3G04830 Protein prenylyltransferase su... Lus10020242
[exp]
3.9 0.7715
AT5G09810 ACT2/7, ACT7 actin 7 (.1) Lus10006783
[exp]
4.1 0.7959
AT3G18060 transducin family protein / WD... Lus10027252
[exp]
8.7 0.7737
AT3G18060 transducin family protein / WD... Lus10038960
[exp]
13.1 0.7842
AT4G38510 ATPase, V1 complex, subunit B ... Lus10024002
[exp]
14.6 0.7917
AT2G41640 Glycosyltransferase family 61 ... Lus10018048
[exp]
16.6 0.7655
AT3G05520 Subunits of heterodimeric acti... Lus10020651
[exp]
20.2 0.7450
AT1G79750 ATNADP-ME4 Arabidopsis thaliana NADP-mali... Lus10038278
[exp]
22.4 0.7568
AT4G16143 IMPA-2 importin alpha isoform 2 (.1.2... Lus10036452
[exp]
29.3 0.6826
AT1G75780 TUB1 tubulin beta-1 chain (.1) Lus10017217
[exp]
29.5 0.7433

Lus10036266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.