Plant FIBer expression Database

Lus10036267 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57950 232 / 2e-77 26S proteasome regulatory subunit, putative (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022151
[exp]
369 / 2e-131 AT5G57950 246 / 9e-83 26S proteasome regulatory subunit, putative (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G184600
[exp]
279 / 5e-96 AT5G57950 284 / 8e-98 26S proteasome regulatory subunit, putative (.1)
PFAM info
Representative CDS sequence
>Lus10036267 pacid=23169403 polypeptide=Lus10036267 locus=Lus10036267.g ID=Lus10036267.BGIv1.0 annot-version=v1.0
ATGGTAGCGACGAACTTGAAATCTGGGACTATGAAGCTGATGGACAAAAGAAGCGCCATCGAGACGGAGATGGATGCCATCATTCAGCGTCTCTCACAGC
CAGGCGGCCCTGGACTTTCGGGCAACCTCGTCGACTCCGAGGGTTTTCCACGGACTGATATAGACATTCCAGTTGTCACAGCAGATAGGCATCGTCTTGC
AGGGCTACGGAATGATCACAAGCAGATTACTAAAAGAATAGAGGAGAGCATAGAACTTCTGCATTCAGCAAGACTTGCGCCTAAATTTTCCAGCCTTGAA
CATTCAGGTACCAACGAAAGTAACCAATTCTCATCAACAACGGCTGCAGATTCCTCCACTTCCATGGACATAGATGCGTTCACCAACATACCATTTGCAG
TAATTGATGAGATAGCTGATGCATCCCCAACCGCCGAAGATGGTATACAGCTTGGAGATCAAATCGTAAAATTCGGCAATGTGGAGTATCAAGTTGGTGA
AAATCTTCTGCAGAAGCTGGCTTCGGAGGCACTGGCCAATCAGAATCGGTCAGTATCTGTGGTCGTACTAAGGCAAGGCTCCCCAACCAACCTAACCGTG
ACCCCAAGACAATGGCAAGGCAGAGGCTTATTAGGTGAAATGCTACGTGGTGTCGCTCCAACAAATGGAAAGGGGTTTTAG
AA sequence
>Lus10036267 pacid=23169403 polypeptide=Lus10036267 locus=Lus10036267.g ID=Lus10036267.BGIv1.0 annot-version=v1.0
MVATNLKSGTMKLMDKRSAIETEMDAIIQRLSQPGGPGLSGNLVDSEGFPRTDIDIPVVTADRHRLAGLRNDHKQITKRIEESIELLHSARLAPKFSSLE
HSGTNESNQFSSTTAADSSTSMDIDAFTNIPFAVIDEIADASPTAEDGIQLGDQIVKFGNVEYQVGENLLQKLASEALANQNRSVSVVVLRQGSPTNLTV
TPRQWQGRGLLGEMLRGVAPTNGKGF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G57950 26S proteasome regulatory subu... Lus10036267
[exp]
0 1
AT2G30620 winged-helix DNA-binding trans... Lus10005535
[exp]
4.2 0.8443
AT1G55150 DEA(D/H)-box RNA helicase fami... Lus10037646
[exp]
6.7 0.8232
AT4G27950 AP2_ERF CRF4 cytokinin response factor 4 (.... Lus10005149
[exp]
15.2 0.8236
AT3G26990 ENTH/VHS family protein (.1) Lus10035182
[exp]
17.9 0.8073
AT2G17030 F-box family protein with a do... Lus10021517
[exp]
29.5 0.7814
AT3G49350 Ypt/Rab-GAP domain of gyp1p su... Lus10022356
[exp]
30.0 0.7879
AT2G01710 Chaperone DnaJ-domain superfam... Lus10015891
[exp]
32.8 0.7863
AT3G58690 Protein kinase superfamily pro... Lus10033606
[exp]
33.5 0.7794
AT1G14650 SWAP (Suppressor-of-White-APri... Lus10013966
[exp]
35.3 0.7664
AT2G30530 unknown protein Lus10019115
[exp]
40.2 0.8107

Lus10036267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.