Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30935 356 / 6e-118 WRKY ATWRKY32, WRKY32 WRKY DNA-binding protein 32 (.1) AT2G03340 173 / 2e-47 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT1G13960 170 / 1e-46 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT4G26640 166 / 3e-45 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT2G04880 162 / 8e-44 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT5G07100 157 / 2e-43 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT2G30250 157 / 6e-43 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT2G38470 159 / 1e-42 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT3G01080 147 / 5e-39 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1) AT4G26440 148 / 3e-38 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022150 [exp] 989 / 0 AT4G30935 374 / 9e-125 WRKY DNA-binding protein 32 (.1) Lus10026634 [exp] 174 / 2e-48 AT1G13960 409 / 1e-139 WRKY DNA-binding protein 4 (.1.2) Lus10015377 [exp] 174 / 1e-47 AT2G03340 417 / 3e-141 WRKY DNA-binding protein 3 (.1) Lus10030424 [exp] 169 / 2e-46 AT1G13960 421 / 7e-144 WRKY DNA-binding protein 4 (.1.2) Lus10043167 [exp] 167 / 3e-45 AT4G26640 473 / 9e-163 WRKY family transcription factor family protein (.1.2) Lus10037131 [exp] 164 / 8e-45 AT2G03340 414 / 1e-141 WRKY DNA-binding protein 3 (.1) Lus10000173 [exp] 159 / 3e-44 AT2G03340 366 / 2e-124 WRKY DNA-binding protein 3 (.1) Lus10016595 [exp] 164 / 7e-44 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10036800 [exp] 161 / 7e-44 AT2G03340 405 / 4e-138 WRKY DNA-binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G107000 [exp] 483 / 2e-166 AT4G30935 373 / 1e-124 WRKY DNA-binding protein 32 (.1) Potri.006G184800 [exp] 468 / 9e-161 AT4G30935 347 / 2e-114 WRKY DNA-binding protein 32 (.1) Potri.006G264000 [exp] 194 / 2e-55 AT4G30935 171 / 1e-47 WRKY DNA-binding protein 32 (.1) Potri.004G120800 [exp] 172 / 5e-47 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.006G105300 [exp] 169 / 9e-46 AT2G38470 341 / 4e-111 WRKY DNA-binding protein 33 (.1) Potri.019G123500 [exp] 168 / 3e-45 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.001G361600 [exp] 167 / 3e-45 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.008G091900 [exp] 165 / 6e-45 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1) Potri.013G153400 [exp] 167 / 7e-45 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.010G163000 [exp] 164 / 2e-44 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10036268 pacid=23169310 polypeptide=Lus10036268 locus=Lus10036268.g ID=Lus10036268.BGIv1.0 annot-version=v1.0 ATGGCGGAGAGCGAAAGGTTGGACGTTCCCCAACCGCAGCAAAACGATGAACCAAAGCAAGTGTCAACAGACCAAGTAGACGTGATTTTCGATGGAGATG GAGAGGAATCGGATGCAGTTGTCGTTGATAACGACAGTGGCGGCGGAGAAGAAGTGGATGATGAAAATGACAAAGACGAGATGCAGCCCGAGCTGAGGAG GCTTACTCCCGAGCTGGATAGTGCCGAGCCGTTGAGCTCTATGCCGCATGAGAAGCCGGGTAACCTAGATTTGGCAGCTTCGGCAGTAGTGTCGGAGAAC GATCAGTGTATAGGTGAGTTGTCCGGAGGTTACGATTTGTTGCAGGAACTAATTTGGAAAGTGATTGCGCATGATCTCCCAGGTTCCTTGGGGAATTCGA CTTTGGAGACGCGTACGGAGGCTGGATTCAAGGACCTAGTGGGGTTATCACAACAAGAAGTTCCCGTGTGTATATCACCCAAAAATGCTAAAGCTGAGGC CGACAATCAGCTTCAGTTGTGGGTTTGTCCTGCTCCCCTGTCAGGATTGTCTCCAACTTCAGTTACCCAACTAATATCATCCGCCCCGGATCCAACTGTA CCTGAACAAAGAGTGCCTTTGTCGAAAGGTAGCACTCTTACTATGCAAGAAGCAAATCAACAGACGCCCTCCCACATTAGAAAGCTAACCATGCCTGTCC TGAAAACACCAATTCCTGATGGTTACAATTGGCGAAAATATGGTCAGAAGCAAGTTAAGAGTCCTAATGGTTCTCGGAGCTACTACAGGTGCACTCATTC TGACTGTTGTGCCAAAAAGATAGAATGTTCTGATCAATCTGGCCATGTCATTGAAATTGTTAATAAAGGATTGCACAGCCATGATCTACCTCAGAAAAGC AATTCCAAAAGAGAAAGTAGGGTTGCAACTTCTGGTAGGCCTATTCCTAGTAGTATCATAGCCGAACATTCAGATCTGCTGCGAGAATCAAACCCAGCAC TACTGTCAGAACAACCTAAGCAACAAAAGACTATAGTTGCTGATGGGAATCGTTTAGACTCGTCTGCCTCTGATGAGACTAATGCTGCTCAAACTAACGA AGAACACATCTGTGAACCAGAGACCAAAAAAAGGTTGAAAAAGGACAACCTGGATTGCCCGGAAGCCCTCTTTAAGCCTGGGAAGAAGTCCAAATTTGTT GTACATGCAGCTGTTGATGTTGGAATCTCAGGTGATGGATATAGATGGCGAAAATATGGACAGAAGATGGTAAAAGGAAATGCTCATCCCAGAAACTATT ACAGATGCACATCTGCCGGGTGCCCAGTCCGCAAGCACATCGAAACAGAGGCAGGCAACTCCAGTGCCGTCATCCTAACATACAAAGGCATCCACGACCA CGACATGCCAGTGCCAAAGAAGCGGCACGGCCCACCTAGTGCTTCTCTGGTGGCTGCCGCAGCTGCAGCCGGTTCCATGAATGCAGTGCAGCAACAAAAG AGCTCAATGAAATGGCCTGCCAGGAAGGAAGGTGAAATAACAAGTCAAACCACTCCAGATGCTGGAGGTGGTGACAAGGACAAAGCGATCGAATCAGCTC GAACACTGCTAAGCATTGGCTTCCAAATCAAGCCTTTTTAA
AA sequence Show only first row Show all	>Lus10036268 pacid=23169310 polypeptide=Lus10036268 locus=Lus10036268.g ID=Lus10036268.BGIv1.0 annot-version=v1.0 MAESERLDVPQPQQNDEPKQVSTDQVDVIFDGDGEESDAVVVDNDSGGGEEVDDENDKDEMQPELRRLTPELDSAEPLSSMPHEKPGNLDLAASAVVSEN DQCIGELSGGYDLLQELIWKVIAHDLPGSLGNSTLETRTEAGFKDLVGLSQQEVPVCISPKNAKAEADNQLQLWVCPAPLSGLSPTSVTQLISSAPDPTV PEQRVPLSKGSTLTMQEANQQTPSHIRKLTMPVLKTPIPDGYNWRKYGQKQVKSPNGSRSYYRCTHSDCCAKKIECSDQSGHVIEIVNKGLHSHDLPQKS NSKRESRVATSGRPIPSSIIAEHSDLLRESNPALLSEQPKQQKTIVADGNRLDSSASDETNAAQTNEEHICEPETKKRLKKDNLDCPEALFKPGKKSKFV VHAAVDVGISGDGYRWRKYGQKMVKGNAHPRNYYRCTSAGCPVRKHIETEAGNSSAVILTYKGIHDHDMPVPKKRHGPPSASLVAAAAAAGSMNAVQQQK SSMKWPARKEGEITSQTTPDAGGGDKDKAIESARTLLSIGFQIKPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10036268 [exp]	0	1
AT2G19930			RNA-dependent RNA polymerase f...		Lus10012965 [exp]	2.4	0.8688
AT3G17900			unknown protein		Lus10013273 [exp]	5.2	0.8389
AT2G14520			CBS domain-containing protein ...		Lus10030665 [exp]	7.4	0.8433
AT3G54190			Transducin/WD40 repeat-like su...		Lus10003237 [exp]	8.5	0.8390
AT5G55040			DNA-binding bromodomain-contai...		Lus10032629 [exp]	10.0	0.8124
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10023119 [exp]	10.8	0.8594
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10042785 [exp]	10.9	0.8177
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Lus10006597 [exp]	11.5	0.8135
AT3G09180			unknown protein		Lus10016953 [exp]	12.5	0.8031
AT2G28150			Domain of unknown function (DU...		Lus10021417 [exp]	13.2	0.8401

Compare expression of checked genes

Lus10036268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.