Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33540 672 / 0 CPL3, ATCPL3 C-terminal domain phosphatase-like 3 (.1) AT5G58003 244 / 8e-71 CPL4 C-terminal domain phosphatase-like 4 (.1) AT2G04930 114 / 7e-28 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G19600 110 / 2e-26 AtCPL5 C-terminal domain phosphatase-like 5, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G17550 110 / 3e-26 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G43610 105 / 9e-25 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G19595 105 / 1e-24 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G54210 105 / 2e-24 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G43600 102 / 4e-24 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G20320 102 / 4e-23 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036689 [exp] 226 / 7e-64 AT5G58003 479 / 2e-167 C-terminal domain phosphatase-like 4 (.1) Lus10036277 [exp] 225 / 2e-63 AT5G58003 474 / 4e-165 C-terminal domain phosphatase-like 4 (.1) Lus10037233 [exp] 221 / 4e-62 AT5G58003 479 / 2e-167 C-terminal domain phosphatase-like 4 (.1) Lus10021854 [exp] 79 / 8e-16 AT5G58003 184 / 5e-56 C-terminal domain phosphatase-like 4 (.1) Lus10015787 [exp] 52 / 2e-06 AT5G11860 410 / 8e-143 SCP1-like small phosphatase 5 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G164300 [exp] 1086 / 0 AT2G33540 905 / 0.0 C-terminal domain phosphatase-like 3 (.1) Potri.001G065600 [exp] 1071 / 0 AT2G33540 919 / 0.0 C-terminal domain phosphatase-like 3 (.1) Potri.018G108300 [exp] 237 / 6e-68 AT5G58003 499 / 3e-175 C-terminal domain phosphatase-like 4 (.1) Potri.003G173700 [exp] 52 / 2e-06 AT5G11860 388 / 2e-133 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.001G353700 [exp] 47 / 6e-05 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2) Potri.001G054700 [exp] 45 / 0.0002 AT5G11860 380 / 2e-130 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.011G078300 [exp] 45 / 0.0002 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [flax] [poplar] BRCT-like PF00533 [flax] [poplar] BRCT BRCA1 C Terminus (BRCT) domain CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Lus10036271 pacid=23169408 polypeptide=Lus10036271 locus=Lus10036271.g ID=Lus10036271.BGIv1.0 annot-version=v1.0 ATGTCGAACAACGACGTAATCGACGGTCGTAAGGTTGGAGATGTCGAGGAAGGTGAAATCTCTGATAACGCCTCCGTTGAAGAGATCAGTGGGGAGGATT TCAAAAAGCAAGATGTTGTTGTTAACTCGGCTAGAAAAGATCCCAAGCCGAAGAAAGACCAACAGGATGCTAGGGTTTGGACGATGAACGATCTGTATAA GTATCAGATGGGCGGAGGTTATGTCGCCGGTTTGTACAACCTCGCTTGGGCCAGGGCTGTACAGAATAAGCCTGTTGTCGAGGTTGCCAAGGACGATGAC AATTCCAAGCGATCCTCTTCTTCCTCTTCTGTGAGTAAAATTGATAAGGTTATAATTTATGACAGTGGTGATGAGATGGAAGAACACAAGGTTGACGATG ATGGTGAGAAAGAGGACGGCGAGTTGGAAGAGGGAGAGATTGATCTGGATTGTGATCCCAATAGTGCTGACCTCATTGCTGTTGATAGCTCCAATGTTGA GTCTAAAGATGACATGGCGAAGCGAGTAAACTTGATTCGTCAGGCCCTGGCTACTGTCACTGTTGTTGAATCAGAGAAACCATTCAAGGAAGCATGTTCA AAGTTGCACGACACATTGGAACGCTTGCTGGAATTGGTTCAGAAACATAGCGTTCCCACAAAAGATGAGCTCGCTCTTCTGTCATTTACTGCTCTTCATT CCGTTAGTTTGGTGAGTGCAGCTTTCATTAGCAGCTCTTCTCCCAAAGGGTTCAAAGTCCAAGCTTTTCTGAAGGATTTTGCTAACACGGGTCACGTTCC ACAGATTGAGTCCATGATTTCTTCGGTAGATGTTTTTTCGACTGATACTGAGATGGGGAAAGCAGGACCAACCTTGGGTGAATTAAATAAGACGGGAAAT TCAAATAAGGGGAAGGATGAGCACACTATTGCAGGTCCTGATTGTGCAGTGAGATATACTAATAATCTTAATTCGGCTGCTGACTCGGCACTTCAGAACA AGCCAAGTACGTCATTTGAAGGTTCTAAACCAGGACTGCCTGCCTTTAGGAACAGAAGTGTTCTGCTTCCACTGCTAGACCTCCATAAAGATCACGATGT AGACAGTCTTCCATCACCGACTAGAGAAGCATCCGTTCCTTTACCTTTGCATAGACCAGGATTTCCTACACCTAGGTCGGCACTGGACCCACTTCCTCGA CATCCTGGCATGCATATGTATGAAAATGATGCACTTAAAGCCTTTTCTAGCTACCAACAGAAATTTGGCCGCAGTTCGCTTGTAATGAAAGACACACTTC CCAGCCCAACACCTTCCGAAGAATCAGGTGAAGGAGATATTGAAATTAGTGGTGAAGTTTCCAGTTCATCCACATCTACCCTGGGTCAACCATCTCCTTC CTTACTTGAGAATTCTAAGGAAGGAGTGTCAACGCCTGCTAGGAATGCTGCATCTGCAAGTTCTTTGTCCATCCCATTGCTGAAAGCCTCAGCAAAGAGC AGGGACCCTAGGCTTCGCTATGTTAAATCTGATACCGGCAATTTGGACCAGAACCACCATGCTTTATCTTCCATGAGTAGTATGCAAAACATTAGCGCTG TTGGTATGACAAATATGAAAAAGCAAAAGGCTGTTAAGGAACCTATGCAGGAAGGCCCTTCATTGAAAAGACAAAGGAACGGACTTGAAAATCATGGAAC TGCTAGGAAGCTGAAAACTGCAGTTGGAAGTGGTGGCTGGTTGGATGATAATGATACTTCTGGACCAAATCTTATCTACGGTAATCAGCTTTCAGAGAGT GCAGAAAGTAATCCAAGGAGAATGGACAATACAACACCTGGGAGTGGTATTCCCATTTTGGGTGCTGGAAAGGAACATATACCAGCAACTAGCTCTAATA CTGCAACTATTACTGAGCTCATGTCTACCTTAGCTTCTACTAGTTCTACCTCCCTTCCAGAGTTGATAAAGAGCATTGCTGTCAATCCTACAATGTTGTT AAGCCTACTTAAGATGGGACAACAACAGAATTTTGCACCTGGTGCCCAGCAGAAACAAGCTGAATCTGCAAAAGGCATGGCCCATCCCATAACCTCAAAT TCAGTTCCCGGAACCCTTCCTAATGTTTCTTCACAGTCATCATGGTCAGGAACGTCGGCAAGGCCAGTTGGGGCTTCTCATCCTACTCAGCTAACTGCTT CGGATGATCCGGGGAAGTTGCGTATGAAGTCTCGCGACCCTCGACGTGCGTTGCATAATAATGCTGTCCAGAGGACTGCCGGCATGGGGTCTGAAGAGCT TAAAGCAAGCGTAGCCCCTACTTCAACAAGCTCCGTGGCAGAAGACAAAAAGATTTTCCAAAAGCAAGAAGTCCGACCAGAATTGAAGGCGTCCCCTTCC CAATCTCTTCTGCCACCTGATATTTCCTTGCCATTTACGAAAAGTTTGAAAAATATTGCCAGCATTATGTCTGATTCTCAAGTGTCAACAACCGTGGCTC ATGCTTCTCAGTGTCTTCCTGTTCAAAATCTGCAAACTAAGGCTAATAAGGTCGAGTCAAATGGCCCAGAAGCGCGAGTTGGAACTGCTGCTTCATCAGG TCAAGTTGGTGTAGTGGCTCCTCGGTCACAGAACACATGGGGTGATGTCAAGCATCTGTTTGATGGGTTTGATGACAAGCAAAAGGCTGCCATACAGAAA GAAAGGACAAGAAGGATAGAAGAGCAGAAGAAAATGTTTGCTGCACACAAACTGTGTCTTGTTTTAGATTTAGATCACACACTCCTCAATTCTGCCAAGT TTTCAGAAGTTGATCCTGTCCATGATGAACTATTGAGAAAGAAAGAAGAACAAGATCGCGAAAAACCACAAAAGCACCTTTTCCGTTTTCCTCATATGGG CATGTGGACAAAATTGCGGCCTGGAATATGGAATTTCCTGGAAAAGGCTAGTCAACTATTTGAACTCCATCTATACACTATGGGCAATAAGCTATATGCT ACAGAGATGGCAAAAGTGCTTGATCCCAAAGGCGTTCTGTTTGCCGGTCGAGTTATTTCCAGGGGTGACGATGGAGATCCAGTTGACGGGGATGATAGGA TACCGAAGAGCAAGGATCTAGAGGGTGTGTTGGGGATGGAGTCAGCTGTGGTTATTATAGATGATTCCGTGAGGGTTTGGCCACATAACAAACTGAATCT AATAGTCGTTGAGAGATATATTTATTTTCCTTGCAGTAGGCGTCAGTTTGGGCTTCCGGGTCCATCTCTTCTTGAGATTGATCATGACGAGAGGCCAGAG GATGGGACATTAGCTTGCTGTTTGGGGGTAATAGAGAGAATTCACCGGAGTTTTTTTAAACACGACTCTCTGGAAGAGGCAGATGTTAGAAATATTCTGG CGTCTGAGCAGAGAAAGATTTTGGCCGGGTGTCGCATTGTATTTAGTAGGATATTCCCAGTTGGGGAAGCGAGTCCGCACCTGCATCCGCTGTGGCAGAC AGCGGAGGAGTTTGGTGCTGTATGTACTAACCAAATAGATGACCAGGTTACACATGTAGTCGCCAATTCACTGGGGACGGACAAGGTGAATTGGGCTCTA TCCGCTGGAAGATTTGTTGTTCATCCTGGCTGGGTTGAAGCATCAGCTCTACTTTACCGGAGAGCAAGTGAACAAGATTTCTCCGTTAAACCCTAA
AA sequence Show only first row Show all	>Lus10036271 pacid=23169408 polypeptide=Lus10036271 locus=Lus10036271.g ID=Lus10036271.BGIv1.0 annot-version=v1.0 MSNNDVIDGRKVGDVEEGEISDNASVEEISGEDFKKQDVVVNSARKDPKPKKDQQDARVWTMNDLYKYQMGGGYVAGLYNLAWARAVQNKPVVEVAKDDD NSKRSSSSSSVSKIDKVIIYDSGDEMEEHKVDDDGEKEDGELEEGEIDLDCDPNSADLIAVDSSNVESKDDMAKRVNLIRQALATVTVVESEKPFKEACS KLHDTLERLLELVQKHSVPTKDELALLSFTALHSVSLVSAAFISSSSPKGFKVQAFLKDFANTGHVPQIESMISSVDVFSTDTEMGKAGPTLGELNKTGN SNKGKDEHTIAGPDCAVRYTNNLNSAADSALQNKPSTSFEGSKPGLPAFRNRSVLLPLLDLHKDHDVDSLPSPTREASVPLPLHRPGFPTPRSALDPLPR HPGMHMYENDALKAFSSYQQKFGRSSLVMKDTLPSPTPSEESGEGDIEISGEVSSSSTSTLGQPSPSLLENSKEGVSTPARNAASASSLSIPLLKASAKS RDPRLRYVKSDTGNLDQNHHALSSMSSMQNISAVGMTNMKKQKAVKEPMQEGPSLKRQRNGLENHGTARKLKTAVGSGGWLDDNDTSGPNLIYGNQLSES AESNPRRMDNTTPGSGIPILGAGKEHIPATSSNTATITELMSTLASTSSTSLPELIKSIAVNPTMLLSLLKMGQQQNFAPGAQQKQAESAKGMAHPITSN SVPGTLPNVSSQSSWSGTSARPVGASHPTQLTASDDPGKLRMKSRDPRRALHNNAVQRTAGMGSEELKASVAPTSTSSVAEDKKIFQKQEVRPELKASPS QSLLPPDISLPFTKSLKNIASIMSDSQVSTTVAHASQCLPVQNLQTKANKVESNGPEARVGTAASSGQVGVVAPRSQNTWGDVKHLFDGFDDKQKAAIQK ERTRRIEEQKKMFAAHKLCLVLDLDHTLLNSAKFSEVDPVHDELLRKKEEQDREKPQKHLFRFPHMGMWTKLRPGIWNFLEKASQLFELHLYTMGNKLYA TEMAKVLDPKGVLFAGRVISRGDDGDPVDGDDRIPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYIYFPCSRRQFGLPGPSLLEIDHDERPE DGTLACCLGVIERIHRSFFKHDSLEEADVRNILASEQRKILAGCRIVFSRIFPVGEASPHLHPLWQTAEEFGAVCTNQIDDQVTHVVANSLGTDKVNWAL SAGRFVVHPGWVEASALLYRRASEQDFSVKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Lus10036271 [exp]	0	1
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10038363 [exp]	2.4	0.9446
					Lus10034709 [exp]	4.0	0.9159
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10011285 [exp]	4.9	0.9370
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10040481 [exp]	5.7	0.9404
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10017680 [exp]	7.0	0.9228
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10032830 [exp]	8.5	0.9254
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Lus10026472 [exp]	9.5	0.9166
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10023867 [exp]	10.2	0.8996
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Lus10018479 [exp]	10.6	0.8843
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10008949 [exp]	10.6	0.9226

Compare expression of checked genes

Lus10036271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.