Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58003 437 / 2e-150 CPL4 C-terminal domain phosphatase-like 4 (.1) AT2G33540 219 / 5e-62 CPL3, ATCPL3 C-terminal domain phosphatase-like 3 (.1) AT2G04930 164 / 4e-47 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G19595 165 / 5e-47 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G54210 157 / 6e-44 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G17550 147 / 2e-40 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G19600 143 / 6e-39 AtCPL5 C-terminal domain phosphatase-like 5, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G20320 144 / 1e-38 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G23470 130 / 4e-34 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G02290 122 / 4e-31 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036689 [exp] 753 / 0 AT5G58003 479 / 2e-167 C-terminal domain phosphatase-like 4 (.1) Lus10037233 [exp] 707 / 0 AT5G58003 479 / 2e-167 C-terminal domain phosphatase-like 4 (.1) Lus10021854 [exp] 274 / 8e-90 AT5G58003 184 / 5e-56 C-terminal domain phosphatase-like 4 (.1) Lus10036271 [exp] 223 / 2e-63 AT2G33540 874 / 0.0 C-terminal domain phosphatase-like 3 (.1) Lus10004596 [exp] 45 / 8e-05 AT5G46410 398 / 3e-135 SCP1-like small phosphatase 4 (.1.2) Lus10015787 [exp] 45 / 0.0001 AT5G11860 410 / 8e-143 SCP1-like small phosphatase 5 (.1.2.3.4) Lus10025376 [exp] 45 / 0.0001 AT5G46410 343 / 2e-114 SCP1-like small phosphatase 4 (.1.2) Lus10004551 [exp] 43 / 0.0005 AT5G46410 286 / 8e-92 SCP1-like small phosphatase 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G108300 [exp] 543 / 0 AT5G58003 499 / 3e-175 C-terminal domain phosphatase-like 4 (.1) Potri.003G164300 [exp] 217 / 2e-61 AT2G33540 905 / 0.0 C-terminal domain phosphatase-like 3 (.1) Potri.001G065600 [exp] 216 / 6e-61 AT2G33540 919 / 0.0 C-terminal domain phosphatase-like 3 (.1) Potri.011G078300 [exp] 52 / 9e-07 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2) Potri.003G173700 [exp] 50 / 2e-06 AT5G11860 388 / 2e-133 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.001G353700 [exp] 47 / 2e-05 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2) Potri.001G054700 [exp] 44 / 0.0003 AT5G11860 380 / 2e-130 SCP1-like small phosphatase 5 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [flax] [poplar] BRCT-like PF00533 [flax] [poplar] BRCT BRCA1 C Terminus (BRCT) domain CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Lus10036277 pacid=23169390 polypeptide=Lus10036277 locus=Lus10036277.g ID=Lus10036277.BGIv1.0 annot-version=v1.0 ATGAGTCTTGTCACTGATTCTCCAGTGAATTCGTCTAGTAGTGACGATTTTGCTGCTTTCCTCGATGGACATCTTGACTCCAAATCTTCGGATGATGACG GAGAACTAAAAAATGGTTCTGCTTCTAGCTTTTCTGCCTCCTCATCCAGTGAGGAAGATTCTGAAGATGAAGAGGATAATCAACCTGTAAGCAAGAGAAC CAAGATTTCTGAGGTGGAGATACTGGAAAATGGAGATAGACGTGAGAGCTCAACTTCTCAGGCAATAGTAAAGCAGAAATTAGGTACTTTCATGGTCATA TCTTCTGACTTCGTTTCAGAAGCATCATCAAGTTCAGCTATCCGCAAGAGCGAGTGTGCACATCGAGGGTCTTTTGCTAATATGTGTATAGATTGTGGGC AAAGGCTTGATGAAGAATCTGGCGTATCATTTGCATATATACATAAGCAATTTAAAATTGGGAATGACGAAGTAAAAAGACGACGGCATATCGAGACGAA GAGCTTATTGGGCCATAAAAAGCTATACCTCATACTTGATCTGGATCATACCCTGCTGAATTCTACTCTTCTTGGGCATATGGTGCCAGAAGAAGAGTAT CTAAATGATCGTCTGGATTCCATGCAAGTTGCTCGAAATGGAAGCTTATTCAAGTTGAACTCCATGCGTATGATGACCAAGCTGAGGCCCTATGTGCGTT CATTTCTGAAGGATGCTAGTCAAATGTTTGATATGTATATATATACAATGGGCGACAAAGCTTATGCACTGGAAATGGCCGATTTGCTTGATCCTGGAAA AGAGTACTTCGATGCGAAAGTTATTTCTCGTGATGATGGAACTCAGAGACATCAGAAGGGTCTTGATGTGGTGCTAGGAGAAGAGAGTGCGGTTCTCATC CTTGATGATACTGAAAATGTATGGCAGAGTCATAGGGACAACTTGATACTGATGGAAAGATACCATTTCTTTGCTTCAAGCTGTCGTCAATTTGGATTCG AATGCAAATCTCTCTCTCAACATAAAAGCGATGAGAGTGAATCCGAAGGAGCACTTGCAACAGTTCTGAGGGTCCTGCAAAGAGTTCACCATATCTTCTT CCACGAACTGGAAGATCAAGCTGGTAGCAGAGACGTGAGGCAGGTTCTGAAAATGGTTCGTAGAGAGGTGCTGAAGGGGTGCAGGATCGTGTTCGGCAGG GTATTCCCAACCCAGTTCCCAGCAGAGAGTCACCACCTGTGGAAGATGGCCGTAAATCTGGGAGCAACGTGCACAATAGAAGTTGATCCATTGGTGACCC ATGTTGTTGCCATGGATCCTGGTACGAAGAAATCTCGTTGGGCACTAGAGAAGAACAAGTTCTTGGTCCTCCCTCGGTGGATAGAGGCAGCGAACTATCA GTGGCAGAGGTTGCCGGAGGAGAAATTCTCAGTGAACCAAACCAAGAGCAATGAGGACCCGCTTAAGTAA
AA sequence Show only first row Show all	>Lus10036277 pacid=23169390 polypeptide=Lus10036277 locus=Lus10036277.g ID=Lus10036277.BGIv1.0 annot-version=v1.0 MSLVTDSPVNSSSSDDFAAFLDGHLDSKSSDDDGELKNGSASSFSASSSSEEDSEDEEDNQPVSKRTKISEVEILENGDRRESSTSQAIVKQKLGTFMVI SSDFVSEASSSSAIRKSECAHRGSFANMCIDCGQRLDEESGVSFAYIHKQFKIGNDEVKRRRHIETKSLLGHKKLYLILDLDHTLLNSTLLGHMVPEEEY LNDRLDSMQVARNGSLFKLNSMRMMTKLRPYVRSFLKDASQMFDMYIYTMGDKAYALEMADLLDPGKEYFDAKVISRDDGTQRHQKGLDVVLGEESAVLI LDDTENVWQSHRDNLILMERYHFFASSCRQFGFECKSLSQHKSDESESEGALATVLRVLQRVHHIFFHELEDQAGSRDVRQVLKMVRREVLKGCRIVFGR VFPTQFPAESHHLWKMAVNLGATCTIEVDPLVTHVVAMDPGTKKSRWALEKNKFLVLPRWIEAANYQWQRLPEEKFSVNQTKSNEDPLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10036277 [exp]	0	1
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10033487 [exp]	2.2	0.8529
AT3G15120			P-loop containing nucleoside t...		Lus10017935 [exp]	2.4	0.8466
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10026154 [exp]	2.6	0.8681
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10031647 [exp]	3.2	0.8645
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027543 [exp]	4.1	0.7963
AT4G05420		DDB1A	damaged DNA binding protein 1A...		Lus10033455 [exp]	5.7	0.8622
AT3G07610		IBM1	increase in bonsai methylation...		Lus10015260 [exp]	6.0	0.8630
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10036700 [exp]	6.5	0.8238
AT3G59630			diphthamide synthesis DPH2 fam...		Lus10009552 [exp]	9.5	0.8111
AT3G13460		ECT2	evolutionarily conserved C-ter...		Lus10020269 [exp]	11.5	0.8151

Compare expression of checked genes

Lus10036277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.