Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30960 643 / 0 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G45820 513 / 0 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT4G18700 488 / 5e-171 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G58380 482 / 1e-168 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT5G45810 476 / 4e-166 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT1G29230 469 / 9e-163 ATCIPK18, ATWL1, CIPK18, SnRK3.20 SNF1-RELATED PROTEIN KINASE 3.20, WPL4-LIKE 1, CBL-interacting protein kinase 18 (.1) AT1G30270 464 / 2e-161 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT1G01140 457 / 4e-159 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT5G25110 454 / 1e-157 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT5G07070 449 / 4e-156 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021852 [exp] 803 / 0 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10007283 [exp] 495 / 6e-174 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10022749 [exp] 487 / 7e-171 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10042229 [exp] 484 / 9e-170 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 477 / 5e-167 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10028115 [exp] 476 / 9e-167 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10024448 [exp] 475 / 5e-166 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10042816 [exp] 473 / 2e-165 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10007448 [exp] 466 / 2e-162 AT5G25110 650 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G186200 [exp] 729 / 0 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.018G108500 [exp] 726 / 0 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.016G133500 [exp] 508 / 4e-179 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 501 / 2e-176 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.019G127500 [exp] 500 / 4e-176 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.013G156000 [exp] 498 / 4e-175 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G048800 [exp] 486 / 1e-170 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.006G263500 [exp] 478 / 1e-167 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.006G062800 [exp] 478 / 3e-167 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.018G119200 [exp] 468 / 3e-163 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10036280 pacid=23169349 polypeptide=Lus10036280 locus=Lus10036280.g ID=Lus10036280.BGIv1.0 annot-version=v1.0 ATGGCGGAGAAGAGCAGAGATGGTCAGACTACTCTGCTCCACGGGAAATACGAGCTCGGTAGGCAGTTAGGCCATGGGACGTTCGCGAAGGTGTACCACG CTCGGAACTTCAAGTCCGGAAAGAGCGTGGCGATGAAGGTCGTAGGAAAAGAGAAGGTGATTAAAGTCGGGATGATGGAGCAGATCCAGCGCGAGATTTC GGTGATGAAGATGGTGAAGCATCCAAACATCGTCGAACTCCACGAGGTGATGGCGAGTAAATCCAAGATCTACATCGCGATGGAGCTTGTCCGCGGTGGG GAGTTATTCAATAAGGTTGCCAAGGGTCGCCTGAAGGAGGACGTTGCCAGAGTCTACTTCCAGCAGCTGATCTCCGCCATCGATTTCTGCCACAGCCGAG GCGTCTACCACCGGGATCTGAAGCCGGAGAATCTACTCCTGGATGAGGAAGGCAACCTGAAGGTAACCGATTTTGGACTCAGCGCCTTCTCCGAGCATCT GAAACAAGACGGCCTCCTCCACACGACATGCGGCACTCCGGCTTACGTAGCGCCTGAGGTCATCGGAAAGAAAGGATACGACGGAGCGAAAGCCGACCTC TGGTCCTGCGGAGTTATCCTCTTTGTCCTGCTCGCCGGGTTCTTACCTTTCCAGGACGATAATCTAGTTGCGATGTACCGGAAAATCTACAGAGGCGACT TTAAATGCCCGCCGTGGTTCTCGTCAGAAGCTCGGAGGCTAATCACAAAGCTCCTGGATCCGAATCCGGCAACGAGAATTACAATCTCCAAAGTCATGGA GTCGTCCTGGTTCAAGAAATCCATCCCGAAGAAGGTGAGATCTAAAGAGGAGATGGAATTCGACACGTTCAACACGGAGGAAGAATCAAAATCTGAGAAA TCAAAGCAGCCGGAGACTCTGAACGCTTTCCACATAATCTCGCTCTCAGAAGGGTTCGATCTGTCGCCTCTGTTTGAAGAGAAGAAGAGGATGGAGAAGG AAGAGCTAAGATTCGCCACAACTAGGCCAGCGAGCAGCGTGATATCGAGACTGGAGGAAGTGGCGAAAGCAGGGAAATTCAGTATGAAGAGGAGCGAGAC GAAGGTAAAGCTGCAAGGAATGGAGAGTGGGAGGAAAGGGAAGCTTGGGATTCAGGCGGAGATATTTGCGGTGACTCAGTCGTTCTTGGTTGTGGAGGTG AAGAAGGATAATGGGGATACGCTGGAGTATAACCAGTTCTGTAGCAAAGAGCTAAGACCGGCGCTTAAGGACATCGTGTGGACTTCGCCGGCGGACGTGG TTGCGTGA
AA sequence Show only first row Show all	>Lus10036280 pacid=23169349 polypeptide=Lus10036280 locus=Lus10036280.g ID=Lus10036280.BGIv1.0 annot-version=v1.0 MAEKSRDGQTTLLHGKYELGRQLGHGTFAKVYHARNFKSGKSVAMKVVGKEKVIKVGMMEQIQREISVMKMVKHPNIVELHEVMASKSKIYIAMELVRGG ELFNKVAKGRLKEDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDEEGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYDGAKADL WSCGVILFVLLAGFLPFQDDNLVAMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPATRITISKVMESSWFKKSIPKKVRSKEEMEFDTFNTEEESKSEK SKQPETLNAFHIISLSEGFDLSPLFEEKKRMEKEELRFATTRPASSVISRLEEVAKAGKFSMKRSETKVKLQGMESGRKGKLGIQAEIFAVTQSFLVVEV KKDNGDTLEYNQFCSKELRPALKDIVWTSPADVVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10036280 [exp]	0	1
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10043112 [exp]	2.6	0.9123
AT5G01830			ARM repeat superfamily protein...		Lus10006090 [exp]	3.9	0.9049
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10017282 [exp]	4.7	0.9117
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10005610 [exp]	6.5	0.9109
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10011930 [exp]	6.7	0.8928
AT2G17990			unknown protein		Lus10041920 [exp]	7.2	0.9093
AT5G25265			unknown protein		Lus10005347 [exp]	7.9	0.8965
AT4G15780		ATVAMP724	vesicle-associated membrane pr...		Lus10000504 [exp]	9.9	0.8501
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10042430 [exp]	10.1	0.9010
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10011113 [exp]	10.2	0.8669

Compare expression of checked genes

Lus10036280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.