Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24260 192 / 9e-59 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G30980 179 / 2e-54 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT5G58010 166 / 2e-49 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT4G02590 111 / 6e-29 bHLH bHLH059, UNE12 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G03040 111 / 2e-28 bHLH bHLH007 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G09530 76 / 4e-15 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT2G20180 75 / 8e-15 bHLH PIF1, PIL5, bHLH015 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) AT4G36930 74 / 1e-14 bHLH SPT, bHLH024 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G67110 71 / 2e-14 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT5G37800 71 / 1e-13 bHLH ATRSL1, bHLH086 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021846 [exp] 489 / 3e-175 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10015909 [exp] 139 / 3e-38 AT4G02590 253 / 2e-82 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10014726 [exp] 131 / 2e-37 AT4G02590 278 / 8e-96 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10006587 [exp] 137 / 3e-37 AT4G02590 245 / 1e-79 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10002720 [exp] 132 / 2e-36 AT4G02590 351 / 8e-122 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10024850 [exp] 127 / 2e-34 AT4G02590 343 / 1e-118 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10018761 [exp] 122 / 3e-32 AT4G02590 318 / 2e-108 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10033592 [exp] 76 / 2e-15 AT1G66470 174 / 5e-53 ROOT HAIR DEFECTIVE6 (.1) Lus10018724 [exp] 74 / 2e-15 AT4G36930 126 / 2e-34 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G109500 [exp] 256 / 1e-82 AT2G24260 194 / 5e-58 LJRHL1-like 1 (.1) Potri.006G186600 [exp] 247 / 5e-79 AT2G24260 198 / 2e-59 LJRHL1-like 1 (.1) Potri.005G053500 [exp] 130 / 2e-35 AT4G02590 228 / 1e-73 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.013G041000 [exp] 130 / 4e-35 AT4G02590 207 / 2e-65 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.006G135600 [exp] 128 / 1e-33 AT5G58010 189 / 1e-56 LJRHL1-like 3 (.1) Potri.005G217800 [exp] 120 / 7e-32 AT4G02590 307 / 2e-104 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G045400 [exp] 116 / 2e-30 AT4G02590 295 / 8e-100 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.013G001300 [exp] 77 / 2e-15 AT1G09530 224 / 6e-65 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.005G001800 [exp] 77 / 3e-15 AT1G09530 247 / 3e-73 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.002G124400 [exp] 75 / 4e-15 AT4G36930 154 / 6e-44 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10036286 pacid=23169347 polypeptide=Lus10036286 locus=Lus10036286.g ID=Lus10036286.BGIv1.0 annot-version=v1.0 ATGCAGCCTTGCAGCAGAGAAATGGCCGCCGGCCTCAACTCCTTGCTTAACGACCTTCACCACTTCGACCCTTCCTCCGCCGCCTCCGCCGACGACTTCC TCGACCATTTAATGCTCTCAGCCATCCCTCCCTCCAACGTCGGCGCCGCTTGGGCCACAGGTGCCGACCTCGTTAAGTCCCCCTGGGCCGACCTCACTTC CGACGACGACACCCTAAACCATAATGTCGCCGGATTTTTCGAGGACTCCGCCACCTTCAATCTCGCATCGAAGCTCCGGCACCACCAAATCAGCGGAGAT GGGAATTCTGTTCACGCGCTTTTTAACGGCTTTTCTGCTGGATCGATTCTTCCTGCAACCGCCCCCTTATCTGAACCGCATTTCAATCTCCCTCCCTCCC AGTTGCGGAGGGAAAGAATTGCAGAGAGAATGAAGTCGTTGCAGGAACTGGTCCCAAATGCCAACAAGACGGACAAGGCTTCGATGCTGGATGAGATAAT CGACTATGTCAAATTCCTCCAGCTCCAAGTCAAGGTTCTGAGCATGAGCCGGCTGGGCGGTGCTGCGGCCGTCGCACCTCTGGTCGTCGACATGTCCTCC GAGGGAGGAGGAGGTGGCGGCGGTGACTGTATCCAAACGACCGGCACCACGGCCGGAGCCAATGGCGGCGCATCAAACGACAATAGTCTGACGATGACCG AGCACCAGGTGGCGAAGCTAATGGAAGAGGACATGGGGTCCGCGATGCAGTACTTGCAAGGGAAAGGCCTCTGCTTAATGCCCATCTCACTCGCCACCGC CATCTCCACCGCCACTTGTACTAACCACCGTCAGCCTTCCTCTCCCAACGTGTCGGTCTTGACGATGCAGTCGGCTACGATGGGCAATGGCACTGCCGGA GGTGACGTGAAGGATGTTGTCTCTGCTCCGTGA
AA sequence Show only first row Show all	>Lus10036286 pacid=23169347 polypeptide=Lus10036286 locus=Lus10036286.g ID=Lus10036286.BGIv1.0 annot-version=v1.0 MQPCSREMAAGLNSLLNDLHHFDPSSAASADDFLDHLMLSAIPPSNVGAAWATGADLVKSPWADLTSDDDTLNHNVAGFFEDSATFNLASKLRHHQISGD GNSVHALFNGFSAGSILPATAPLSEPHFNLPPSQLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVVDMSS EGGGGGGGDCIQTTGTTAGANGGASNDNSLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCTNHRQPSSPNVSVLTMQSATMGNGTAG GDVKDVVSAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24260	bHLH	LRL1, bHLH066	LJRHL1-like 1 (.1)		Lus10036286 [exp]	0	1
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10037232 [exp]	11.1	0.9397
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10022441 [exp]	12.3	0.9369
AT1G19530			unknown protein		Lus10002540 [exp]	15.1	0.9379
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10015018 [exp]	15.9	0.9381
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10040328 [exp]	17.4	0.9251
AT4G26400			RING/U-box superfamily protein...		Lus10043027 [exp]	25.7	0.9332
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031659 [exp]	26.1	0.9368
AT1G76150		ECH2, ATECH2	enoyl-CoA hydratase 2 (.1)		Lus10005648 [exp]	26.8	0.9307
AT2G27480			Calcium-binding EF-hand family...		Lus10043389 [exp]	29.3	0.9299
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	30.3	0.9333

Compare expression of checked genes

Lus10036286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.