Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16990 463 / 9e-165 Zinc-binding dehydrogenase family protein (.1) AT3G03080 461 / 1e-163 Zinc-binding dehydrogenase family protein (.1) AT5G16970 457 / 3e-162 AT-AER alkenal reductase (.1) AT1G26320 453 / 1e-160 Zinc-binding dehydrogenase family protein (.1.2) AT5G17000 451 / 6e-160 Zinc-binding dehydrogenase family protein (.1) AT5G37940 446 / 6e-158 Zinc-binding dehydrogenase family protein (.1) AT5G37980 441 / 9e-156 Zinc-binding dehydrogenase family protein (.1) AT5G16960 440 / 2e-155 Zinc-binding dehydrogenase family protein (.1) AT5G38000 439 / 3e-155 Zinc-binding dehydrogenase family protein (.1) AT3G59845 411 / 2e-144 Zinc-binding dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003638 [exp] 501 / 0 AT3G03080 356 / 8e-124 Zinc-binding dehydrogenase family protein (.1) Lus10010988 [exp] 466 / 7e-166 AT5G16990 486 / 6e-174 Zinc-binding dehydrogenase family protein (.1) Lus10010989 [exp] 451 / 8e-160 AT5G16990 483 / 2e-172 Zinc-binding dehydrogenase family protein (.1) Lus10004379 [exp] 447 / 2e-158 AT5G17000 487 / 4e-174 Zinc-binding dehydrogenase family protein (.1) Lus10004380 [exp] 442 / 2e-156 AT5G37980 477 / 4e-170 Zinc-binding dehydrogenase family protein (.1) Lus10040177 [exp] 441 / 8e-156 AT5G37980 480 / 3e-171 Zinc-binding dehydrogenase family protein (.1) Lus10007853 [exp] 439 / 5e-155 AT5G16990 468 / 3e-166 Zinc-binding dehydrogenase family protein (.1) Lus10007832 [exp] 436 / 7e-154 AT5G16990 464 / 3e-165 Zinc-binding dehydrogenase family protein (.1) Lus10040589 [exp] 375 / 4e-128 AT1G65560 446 / 3e-156 Zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G002300 [exp] 492 / 4e-176 AT1G26320 488 / 2e-174 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G002700 [exp] 487 / 4e-174 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G142400 [exp] 465 / 2e-165 AT5G16990 491 / 1e-175 Zinc-binding dehydrogenase family protein (.1) Potri.007G143600 [exp] 461 / 1e-163 AT5G16970 501 / 1e-179 alkenal reductase (.1) Potri.017G005700 [exp] 456 / 3e-161 AT1G26320 496 / 1e-176 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G143800 [exp] 450 / 2e-159 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G006000 [exp] 450 / 3e-159 AT5G37980 493 / 2e-176 Zinc-binding dehydrogenase family protein (.1) Potri.007G143700 [exp] 449 / 5e-159 AT5G16970 495 / 2e-177 alkenal reductase (.1) Potri.017G002950 [exp] 446 / 6e-158 AT5G16970 464 / 7e-165 alkenal reductase (.1) Potri.017G005400 [exp] 446 / 9e-158 AT5G37980 488 / 3e-174 Zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10036289 pacid=23169416 polypeptide=Lus10036289 locus=Lus10036289.g ID=Lus10036289.BGIv1.0 annot-version=v1.0 ATGGCGACGACGGTGAGGAACAAGCAAGTGATACTAAATGACTATGTATCGGGATTTCCAAAAGAATCCGACATGTCCATTGCCATCGGAAGCATCCCGG ATTCCGACGGCGGCCTTGTCCTTCAAAACCTCTACTTATCATGTGATCCGTACATGCGCCCTCGTATGTCCAAAACACAAGGCGGCTCCTCCTACGTCTC CTCCTTTCAGCCTGGATCGCCATTGAGTGGATTAGGAGTGGCAAAGGTTATGGAAACAAGAGGAGATTCAGATTTCCAAAAGGGAGATTTGGTTTGGGGG ATGACTGGTTGGGAAGAGTACAGCCTTAACACACAGCCTTCCCAGCTTTTCAAGATTCAACACACTGATGTTCCACTCTCCTATTACACTGGAATTCTCG GTATGCCTGGGATGACAGCTTATGTCGGATTGCACGAGCTTTGCTCCCCTAAAAGCGGAGAGTTTGTGTTTGTATCAGCAGCTTCTGGTGCTGTCGGTCA GCTTGTTGGCCAGTTTGCTAAGTTGGCTGGTTGCTATGTTGTTGGAAGTGCTGGTACTGATCAAAAAGTTGATCTTCTCAAGAACAAGTTTGGTTTCGAC GATGCTTTCAACTACAAACAAGAGCCAGACTTGGATGCTGCATTGAAAAGATACTTCCCTCAAGGTATAGACATCTACTTTGAGAATGTGGGAGGGAAGA TGCTGGAAGCTGTGCTAGCCAACATGAGACTCCATGGGAGGATTGCTGTGTGTGGTATGATCTCACAGTACAACCTGGAGAAACCTGAAGGAGTCCACAA CTTGATGAAGCTGATTTCGATGCGAATTAAGATGGTAGGGTTCATAGTAAATGACCATTACCATCTCTACCCAAAGTATATGGAGATGGTGCTTCCCAAA ATTAGGGAAGGCAAAATTGTGTATGTGGAAGACATTGCTCATGGTTTGGACAGTGCTCGAGCTGCTCTTGTCGGTCTCTTCTACGGCCGCAATCTTGGCA AACAAGTTATTAAGGTTTCTGTTGAATGA
AA sequence Show only first row Show all	>Lus10036289 pacid=23169416 polypeptide=Lus10036289 locus=Lus10036289.g ID=Lus10036289.BGIv1.0 annot-version=v1.0 MATTVRNKQVILNDYVSGFPKESDMSIAIGSIPDSDGGLVLQNLYLSCDPYMRPRMSKTQGGSSYVSSFQPGSPLSGLGVAKVMETRGDSDFQKGDLVWG MTGWEEYSLNTQPSQLFKIQHTDVPLSYYTGILGMPGMTAYVGLHELCSPKSGEFVFVSAASGAVGQLVGQFAKLAGCYVVGSAGTDQKVDLLKNKFGFD DAFNYKQEPDLDAALKRYFPQGIDIYFENVGGKMLEAVLANMRLHGRIAVCGMISQYNLEKPEGVHNLMKLISMRIKMVGFIVNDHYHLYPKYMEMVLPK IREGKIVYVEDIAHGLDSARAALVGLFYGRNLGKQVIKVSVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10036289 [exp]	0	1
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10031421 [exp]	14.6	0.9116
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10017094 [exp]	26.1	0.9028
AT1G20180			Protein of unknown function (D...		Lus10010144 [exp]	31.2	0.8909
AT1G09195			unknown protein		Lus10031400 [exp]	36.6	0.8952
					Lus10043397 [exp]	37.9	0.8965
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10004225 [exp]	44.9	0.8957
AT3G25640			Protein of unknown function, D...		Lus10034386 [exp]	48.4	0.8947
AT1G18010			Major facilitator superfamily ...		Lus10006288 [exp]	49.4	0.8790
AT5G42610			Protein of unknown function (D...		Lus10010793 [exp]	54.3	0.8887
AT4G03230			S-locus lectin protein kinase ...		Lus10018512 [exp]	65.4	0.8687

Compare expression of checked genes

Lus10036289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.