Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18900 404 / 5e-130 Transducin/WD40 repeat-like superfamily protein (.1) AT3G26480 266 / 4e-78 Transducin family protein / WD-40 repeat family protein (.1) AT3G18130 48 / 1e-05 RACK1C_AT receptor for activated C kinase 1C (.1) AT1G48630 48 / 2e-05 RACK1B_AT receptor for activated C kinase 1B (.1) AT5G08390 46 / 8e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 45 / 0.0002 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 44 / 0.0003 Transducin/WD40 repeat-like superfamily protein (.1) AT1G18080 42 / 0.001 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003637 [exp] 615 / 0 AT2G18900 921 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10040039 [exp] 63 / 1e-11 ND / Lus10014861 [exp] 59 / 1e-10 ND / Lus10032877 [exp] 58 / 6e-10 ND / Lus10010270 [exp] 57 / 2e-09 ND / Lus10006589 [exp] 54 / 3e-07 AT3G18970 140 / 2e-37 mitochondrial editing factor 20 (.1) Lus10031094 [exp] 49 / 2e-06 ND 39 / 0.003 Lus10017569 [exp] 45 / 0.0001 AT1G18080 546 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Lus10034051 [exp] 41 / 0.0002 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G166500 [exp] 445 / 2e-145 AT2G18900 1030 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G091100 [exp] 443 / 1e-144 AT2G18900 1036 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10036290 pacid=23169394 polypeptide=Lus10036290 locus=Lus10036290.g ID=Lus10036290.BGIv1.0 annot-version=v1.0 ATGGAGAGGGGACAAGGTGGTCTAGTAGGTAGGGGAGATCTATTTCTCGCCACTCACACGAAGGCTGATAGGAAGACCTATCCCACGACTGCAACAGAAA AACAATGTTTTGTCGAAGTTAACCCAGTGGAGAGAAACCAGGCCGAGTATGAGGTCTATGCCATGGGGCGAATCCAACGAAAAGGCGGAAGAAACTACGT CTCCTCCCCGCCGTCTTTCTCCAACGATGCCAAGCGCCTCCTGGTTTGCGCCGGCAACTCTGTCGCCGTTTTCAGTACTGCCGCTGGCTTGCAGGTATCG TCGTTAGATGCCCATACGGCGCCTGTGACAGCGGTGATAGTGGTGCCGGCGTCCAGTCCGGGGAGTATGATTCTCTGCTTTTGTTGGACGAGTTCGCTCG ATGGAACTATCCGGTACTGGGACTTCGCAGCTCCGGAGTTGATTCGGACTGTTGATATCAAGCTCCCTGTTTACTCAATGGTGATTCCTTCTATCGTTAT CCAACCAGCTGTATCAATTGAAAAGAAGGCAAAAGTTTTTGCTTACATTTCAGTAGAAGCTAAAAGAGAATCAGATAATGGTTTATGTGGACAACTCCGA AAATTTAACTTGACTGATTCTCGTATGGTTGGAGGAGCAATATTAGCTGAGATGAAGAAGCCAGAGGTGTTAACTATTAGCCCCTCTGGAGACCTTTTTG GTGTCCGTAGAAAGCATAAACTTCAGATATGGAAAGTTCCATCTGCTGATTCTGACCGTACAGTGCTGAAGAAGATTACCCTGCATCATACAAAGACCAT TTCAGCTATTGCATTCCACCCTACCCAAAGAATTATTGCTGCAGGAGATGTGACTGGACGAATTTTGACGTGGAGAGGATTCGGAGATAAAACATTTGCT ATGTCTGTTGGGCATGTGAATGGGAGTGCCATGGACACTGATGAAGAAAATCCTGGCGTCAGGGTTAATGATGATGCTGATACATGCACAACATGGCACT GGCATCCTGATCAAGTGAACTTACTCTCATTTTCTTCTGATGGAGCTTATTTGCTTTCAGGGGGGAAAGAAGGCGTGCTTGTAGTCTGGCAAGTAGACAC AGGGAAGAAAAAGTTCTTGCCGAGGATTGGATCCCCACTCTTACATTTGGTGGACTCTCCAGATCCTTCACTTTCCTCAATAATTGTGACATCAGTAGTT CTGTCTCCAGATGGTTCTATGATGTGTACTTCTGAGGTGAGGCTGCCTGAAGATGGCTTGGGAAACCTTATTTGCCTTAAATTTTGGGACTCGAAGTCAA AGACTGGAGATTTCAGTCTATCGACCATTGTTTATGAACCACACAGGAAAAAGTTGATGACTGCAGCTGCTTTCTCCCCTGATGGTTCTGTTCTGGCTGT TGCAGCTGAAACGGTGATCACACTGTGGGATCCTACTAATAATCTTCTTGTGGCTGTGATAGGAGAAGTTCCCATGCCAATTGCAACCCTCTCATTCATC GGGAATTCAGACCATCTTGTTTCGACATCACTGGGTTCCAAGCCACAACTCTCTGTTTGGAGTTTGTCAAGTCTATCTTTAAGTTGGTCGTACGGCCTCC ACATAGAAGCCATAACCAGTTCACCAGACACATCCTCGTTTGCTGCTCTCGTCCTCCTTCCACAATCGGTTCGAGCTGATGATTCCATGGACAAAGCACA CAAAAATGTTGATGGGTTAATATTGTTATTCAATTCTGCGGAACCCAATCCTTTAGCCGTGTGGTCAGTGAAGCAGGCAAAAAGTGGTGCACTTGCTTTT ATCAAGAATCAGTCTTCTGACCAACAGGCTCAAACACTACTTGCATACATGAATGGTGATCACGAGTACGTTCTGTTTAATCCATATAAGAACGAAGGTA ACGAACTTGGCGTAGCAAAGTGGAAGGGTCATCAAAACAGCCTTGAAGAAGCTGGTAAATTCGGTTACGAGTCTCTCTACGGGGAGCTACCTCCAGAGCG AAAGGAAACTGCGAAACAGATATTATGGATTCCGTCCGCACCTACTGACGAGAGAGCCTGGGAGAAAATATTCGGCACTTCATCTCACAATCCTCCAGCC CTTACTAAATTATGTGCGTCGTATCTGGTATCTCTCTTGGAGAAAAGAAGTAGCGTCCAGGAATGA
AA sequence Show only first row Show all	>Lus10036290 pacid=23169394 polypeptide=Lus10036290 locus=Lus10036290.g ID=Lus10036290.BGIv1.0 annot-version=v1.0 MERGQGGLVGRGDLFLATHTKADRKTYPTTATEKQCFVEVNPVERNQAEYEVYAMGRIQRKGGRNYVSSPPSFSNDAKRLLVCAGNSVAVFSTAAGLQVS SLDAHTAPVTAVIVVPASSPGSMILCFCWTSSLDGTIRYWDFAAPELIRTVDIKLPVYSMVIPSIVIQPAVSIEKKAKVFAYISVEAKRESDNGLCGQLR KFNLTDSRMVGGAILAEMKKPEVLTISPSGDLFGVRRKHKLQIWKVPSADSDRTVLKKITLHHTKTISAIAFHPTQRIIAAGDVTGRILTWRGFGDKTFA MSVGHVNGSAMDTDEENPGVRVNDDADTCTTWHWHPDQVNLLSFSSDGAYLLSGGKEGVLVVWQVDTGKKKFLPRIGSPLLHLVDSPDPSLSSIIVTSVV LSPDGSMMCTSEVRLPEDGLGNLICLKFWDSKSKTGDFSLSTIVYEPHRKKLMTAAAFSPDGSVLAVAAETVITLWDPTNNLLVAVIGEVPMPIATLSFI GNSDHLVSTSLGSKPQLSVWSLSSLSLSWSYGLHIEAITSSPDTSSFAALVLLPQSVRADDSMDKAHKNVDGLILLFNSAEPNPLAVWSVKQAKSGALAF IKNQSSDQQAQTLLAYMNGDHEYVLFNPYKNEGNELGVAKWKGHQNSLEEAGKFGYESLYGELPPERKETAKQILWIPSAPTDERAWEKIFGTSSHNPPA LTKLCASYLVSLLEKRSSVQE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18900			Transducin/WD40 repeat-like su...		Lus10036290 [exp]	0	1
AT2G40430			unknown protein		Lus10037530 [exp]	2.0	0.8688
AT4G28450			nucleotide binding;protein bin...		Lus10037378 [exp]	2.0	0.8495
AT5G54910			DEA(D/H)-box RNA helicase fami...		Lus10012172 [exp]	2.4	0.8476
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10028778 [exp]	3.5	0.8678
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10036700 [exp]	5.2	0.8317
AT3G56990		EDA7	embryo sac development arrest ...		Lus10019107 [exp]	6.0	0.8607
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10043417 [exp]	7.3	0.7907
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10008806 [exp]	8.0	0.8332
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Lus10016610 [exp]	8.4	0.8190
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Lus10012061 [exp]	10.5	0.8254

Compare expression of checked genes

Lus10036290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.