Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32070 432 / 9e-155 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G80780 432 / 1e-154 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) AT5G10960 394 / 2e-139 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G15920 340 / 4e-118 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT3G44260 276 / 3e-93 AtCAF1a CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G22250 273 / 1e-91 AtCAF1b CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G06450 161 / 3e-47 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G61470 132 / 7e-37 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G44240 120 / 1e-32 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27820 119 / 7e-32 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003635 [exp] 552 / 0 AT2G32070 435 / 6e-156 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10017123 [exp] 427 / 2e-152 AT2G32070 447 / 1e-160 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10018330 [exp] 426 / 4e-152 AT2G32070 444 / 3e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10034180 [exp] 286 / 5e-97 AT5G22250 410 / 4e-146 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10021304 [exp] 272 / 2e-91 AT5G22250 335 / 8e-116 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10004212 [exp] 268 / 6e-90 AT3G44260 336 / 1e-116 CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10016980 [exp] 266 / 4e-88 AT5G22250 332 / 8e-114 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10008043 [exp] 150 / 3e-43 AT1G06450 165 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10017905 [exp] 146 / 1e-41 AT1G06450 162 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G046700 [exp] 456 / 2e-164 AT2G32070 472 / 2e-170 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G181100 [exp] 451 / 2e-162 AT1G80780 468 / 1e-168 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) Potri.018G020900 [exp] 442 / 1e-158 AT2G32070 441 / 2e-158 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G262500 [exp] 441 / 4e-158 AT2G32070 443 / 5e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G187200 [exp] 437 / 2e-156 AT2G32070 403 / 2e-143 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.004G200400 [exp] 295 / 2e-100 AT5G22250 419 / 3e-149 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.009G161500 [exp] 290 / 1e-98 AT5G22250 387 / 1e-136 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G073000 [exp] 278 / 1e-93 AT3G44260 322 / 5e-111 CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G205600 [exp] 276 / 1e-92 AT5G22250 302 / 4e-103 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G040400 [exp] 224 / 8e-73 AT5G22250 253 / 4e-84 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF04857 [flax] [poplar] CAF1 CAF1 family ribonuclease
Representative CDS sequence Show only first row Show all	>Lus10036291 pacid=23169311 polypeptide=Lus10036291 locus=Lus10036291.g ID=Lus10036291.BGIv1.0 annot-version=v1.0 ATGTCGATTCTGCCTAAGAGCGAGTCAATAATTATCCGTGACGTGTGGAATGAGAATCTGGAAGATGAATTCAATTTGATTATGGACATAGTTGATGATT TCCCTTTCATTGCAATGGACAGAGAGTTCCCTGGAATTATCGTTCGGCCCGTAGGAAATTTCAAGAACGGTTCTGACTACAATTATCAAACCCTAAAGGC CAATGTGGATCTTCTAAAGTTGATTCAGCTTGGATTAACTTTCTCAGACGAGAATGGCAGCTTGCCAAAATGTGGGACTGGGAAGTACTGTGTCTGGCAG TTCAACTTCCGCGAATTCAACCCGGTTGAGGATTTCTATGCCGATGACTCCATAGAGCTTCTGACACAGAGTGGCATTGATTTCCAGAAGAACACCGAGG TGGGTGTCGATACCAAGCGATTTAGCGAGTTGCTAATGTCGTCGGGGATTGTGTTGAATGACAGTGTGCATTGGGTTACTTTCCATAGTGGGTATGATTT TGGATACCTGTTAAAGCTTCTCACTTGCAAGAACCTTCCTGACACACAATCAGAGTTCTTCAAGTTGATCAGGTTATACTTCCCTGTGCTCTATGATATT AAGCACCTGGTCAAGTTCTGCAATAGTCTTCATGGTGGATTGAACAAGCTAGCGGAGCTGTTGGATGTGGAGAGGATTGGAATCTGTCATCAAGCCGGCT CGGATAGTTTGCTTACATGTTGTACATTCATGAAATTGAAAGAGAGTTTCTTCAATGGTTCGACGGAGAAGTATGTTGGTGTGCTTTATGGCCTTGGTGT TGAGAATGGTCAGAATGCTCATTAA
AA sequence Show only first row Show all	>Lus10036291 pacid=23169311 polypeptide=Lus10036291 locus=Lus10036291.g ID=Lus10036291.BGIv1.0 annot-version=v1.0 MSILPKSESIIIRDVWNENLEDEFNLIMDIVDDFPFIAMDREFPGIIVRPVGNFKNGSDYNYQTLKANVDLLKLIQLGLTFSDENGSLPKCGTGKYCVWQ FNFREFNPVEDFYADDSIELLTQSGIDFQKNTEVGVDTKRFSELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCKNLPDTQSEFFKLIRLYFPVLYDI KHLVKFCNSLHGGLNKLAELLDVERIGICHQAGSDSLLTCCTFMKLKESFFNGSTEKYVGVLYGLGVENGQNAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32070			Polynucleotidyl transferase, r...		Lus10036291 [exp]	0	1
AT2G32070			Polynucleotidyl transferase, r...		Lus10003635 [exp]	2.6	0.8680
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Lus10022853 [exp]	2.8	0.8209
AT3G05640			Protein phosphatase 2C family ...		Lus10020671 [exp]	3.0	0.8221
AT5G27930			Protein phosphatase 2C family ...		Lus10020670 [exp]	3.2	0.8122
AT5G56450		PM-ANT	Mitochondrial substrate carrie...		Lus10013518 [exp]	3.3	0.7528
AT3G22430			unknown protein		Lus10021917 [exp]	3.7	0.7895
AT1G31830			Amino acid permease family pro...		Lus10007593 [exp]	4.7	0.8243
AT1G08800			Protein of unknown function, D...		Lus10024869 [exp]	6.9	0.7527
AT2G43770			Transducin/WD40 repeat-like su...		Lus10002211 [exp]	9.4	0.7783
AT2G28190		CZSOD2, CSD2	copper/zinc superoxide dismuta...		Lus10021410 [exp]	13.2	0.8034

Compare expression of checked genes

Lus10036291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.