Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58030 248 / 1e-83 Transport protein particle (TRAPP) component (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003634 [exp] 310 / 9e-108 AT5G58030 367 / 3e-131 Transport protein particle (TRAPP) component (.1) Lus10003350 [exp] 262 / 2e-88 AT5G58030 364 / 2e-129 Transport protein particle (TRAPP) component (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G187300 [exp] 255 / 1e-86 AT5G58030 380 / 7e-137 Transport protein particle (TRAPP) component (.1) Potri.018G110000 [exp] 250 / 1e-84 AT5G58030 342 / 1e-121 Transport protein particle (TRAPP) component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0210 [flax] [poplar] HNOX-like PF04051 [flax] [poplar] TRAPP Transport protein particle (TRAPP) component
Representative CDS sequence Show only first row Show all	>Lus10036292 pacid=23169392 polypeptide=Lus10036292 locus=Lus10036292.g ID=Lus10036292.BGIv1.0 annot-version=v1.0 ATGATAGGTGCAAGCAAGATCAAGCAATACTCCAATGTCCTCGACAAACCCCTAAGCAAGGGCAAGCAAGAGGTTAGTCTGAGTGCTTTTGCGTTTTTGT TTTCGGAGCTCGTTCAGTACAACCAAACACAGGTTGACAATATTGCTGAGTTAGAACGAAGGTTGGAGGATGCAGGCTACGCTGTTGGAGCTCGAGTTCT TGAACTTCTTTGTCATAGAGAAAAGGTATACCTGTCCTTGTTAACTTGGGAAATAGACGTGAAACACGACTTCTGGGTATCTTGTCTTTTGTACACAGCA CGGTGTGGAAGGTTTTATTTGGGAAGCCGCATTCAAGGAATTCTGATCAACGATAACATTTGCAGATTCATTTCCATTCCGAAAGACATGGGAACTTTTA ACTGTGGCGCTTTTGTTGCTGGAATTGTGAGGGGTGTGTTGGATGGTGCGGGTTTTCCTGCAGTTGTAACAGCGCATTTCGTTCCTATGGAAGGCCAGCA ACGACCTAGGACCACCATTCTGATAAAATTTGCAGAAGAGGTAGCTGTCATTTTCTATTCGCTCAAGATTTTCGGGCCTCTTGGTTGTGAAAACATAAAT CATGAAGTCGTATGTTTCATTAGGTTAATTGACGCATCTTGGTCAATTTGCTTATGTTCCCTGAATATTTCCTATATGTGCAAACAGGTACTAAGAAGAG AAGCAAGATTAGTATGA
AA sequence Show only first row Show all	>Lus10036292 pacid=23169392 polypeptide=Lus10036292 locus=Lus10036292.g ID=Lus10036292.BGIv1.0 annot-version=v1.0 MIGASKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHREKVYLSLLTWEIDVKHDFWVSCLLYTA RCGRFYLGSRIQGILINDNICRFISIPKDMGTFNCGAFVAGIVRGVLDGAGFPAVVTAHFVPMEGQQRPRTTILIKFAEEVAVIFYSLKIFGPLGCENIN HEVVCFIRLIDASWSICLCSLNISYMCKQVLRREARLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58030			Transport protein particle (TR...		Lus10036292 [exp]	0	1
AT2G18390		HAL, ARL2, TTN5...	TITAN 5, HALLIMASCH, ARF-LIKE ...		Lus10042271 [exp]	1.0	0.8152
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10032606 [exp]	5.7	0.7914
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10042861 [exp]	6.0	0.7638
AT1G75980			Single hybrid motif superfamil...		Lus10005613 [exp]	9.2	0.6967
AT5G14240			Thioredoxin superfamily protei...		Lus10032064 [exp]	15.3	0.7613
AT3G18510			unknown protein		Lus10032475 [exp]	15.5	0.7721
AT2G39960			Microsomal signal peptidase 25...		Lus10009885 [exp]	21.0	0.6959
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Lus10028205 [exp]	25.1	0.6527
AT3G12770		MEF22	mitochondrial editing factor ...		Lus10024876 [exp]	27.1	0.7488
AT5G22280			unknown protein		Lus10016983 [exp]	27.8	0.7467

Compare expression of checked genes

Lus10036292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.