Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20630 190 / 4e-61 ATGER3, GLP3A, GLP3B, GLP3 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) AT1G72610 179 / 1e-56 ATGER1, GLP1 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) AT3G05930 125 / 2e-35 GLP8 germin-like protein 8 (.1) AT3G10080 124 / 4e-35 RmlC-like cupins superfamily protein (.1) AT1G18980 124 / 4e-35 RmlC-like cupins superfamily protein (.1) AT5G26700 123 / 9e-35 RmlC-like cupins superfamily protein (.1) AT1G09560 122 / 3e-34 GLP5 germin-like protein 5 (.1) AT3G05950 121 / 7e-34 RmlC-like cupins superfamily protein (.1) AT3G04200 120 / 8e-34 RmlC-like cupins superfamily protein (.1) AT1G02335 120 / 8e-34 GL22 germin-like protein subfamily 2 member 2 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037664 [exp] 254 / 3e-86 AT5G20630 198 / 3e-64 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037665 [exp] 235 / 1e-78 AT1G72610 179 / 1e-56 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Lus10015647 [exp] 231 / 5e-77 AT1G72610 184 / 8e-59 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Lus10037666 [exp] 226 / 6e-75 AT1G72610 181 / 9e-58 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Lus10037663 [exp] 216 / 5e-71 AT5G20630 209 / 2e-68 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037661 [exp] 206 / 3e-67 AT5G20630 182 / 6e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015643 [exp] 204 / 3e-66 AT5G20630 182 / 4e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10020026 [exp] 199 / 1e-64 AT5G20630 190 / 3e-61 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10020851 [exp] 195 / 8e-63 AT5G20630 181 / 2e-57 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G065266 [exp] 218 / 7e-72 AT1G72610 240 / 6e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.001G169000 [exp] 215 / 8e-71 AT1G72610 241 / 2e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.006G142600 [exp] 198 / 2e-64 AT5G20630 270 / 6e-93 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Potri.011G163800 [exp] 135 / 2e-39 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.005G001300 [exp] 133 / 9e-39 AT3G62020 309 / 5e-108 germin-like protein 10 (.1.2) Potri.013G000500 [exp] 131 / 5e-38 AT1G09560 311 / 1e-108 germin-like protein 5 (.1) Potri.008G020800 [exp] 128 / 6e-37 AT3G10080 263 / 7e-90 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 128 / 8e-37 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163200 [exp] 128 / 8e-37 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.010G238200 [exp] 126 / 3e-36 AT3G10080 263 / 7e-90 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10036296 pacid=23169388 polypeptide=Lus10036296 locus=Lus10036296.g ID=Lus10036296.BGIv1.0 annot-version=v1.0 ATGACGTTCTTTCCTAATAGTCAACTATTCATTACAATCACCTTCCTCTTCTTCACCATCTCCACCACCTACTTCAATTCCTCTCAAGCAGTTGATTTCT GTGTTGCAGATCTCTCAGGCTACCAAACCCCTTCTGGGTATGTATGCAAGAACCCGGCCAATGTCACCGTCGACGACTTTGTCTTCTCGGGCCTTGTCGC CGCTGCAAACACCTCCAACATCAACAAAGCAACCGCCACACCAGCTACCGTCCAACAATTCCCAGGACTGAATGGGCTGAACCTGGCCGCGGCTAGGGCA GACATCGAGCCAGGGGGTGCGGTCCCACTCCACACCCACCCGTACTCGTCGGAGATGATATACGTGGTGGAGGGGACAGTAACTGCAGGGTTTGTGTCCG GGATAACCTCCAATACCGTGTACGTCAAGAAACTGAAAAAGGGGGAGATCATGGTTTTTCCACAAGGGTTGGTCCATTTCCAAGCCAACACTGGGGGTGT ACACGCCGTCGTTTTCGCTACCTTTGGGAATGCGGATCCTGGTGTCCAGCTTATTAGCTCTGCCTTGTTTGGGAACAACTTCTCGTCTTTCCTTGTGGAG AAAACTACCAACATTGGTCAGCTTGAAATCAAGAGGCTCAAAACTCTTTTTGGTGGCTCTGAGTAG
AA sequence Show only first row Show all	>Lus10036296 pacid=23169388 polypeptide=Lus10036296 locus=Lus10036296.g ID=Lus10036296.BGIv1.0 annot-version=v1.0 MTFFPNSQLFITITFLFFTISTTYFNSSQAVDFCVADLSGYQTPSGYVCKNPANVTVDDFVFSGLVAAANTSNINKATATPATVQQFPGLNGLNLAAARA DIEPGGAVPLHTHPYSSEMIYVVEGTVTAGFVSGITSNTVYVKKLKKGEIMVFPQGLVHFQANTGGVHAVVFATFGNADPGVQLISSALFGNNFSSFLVE KTTNIGQLEIKRLKTLFGGSE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10036296 [exp]	0	1
AT1G74790			catalytics (.1)		Lus10033116 [exp]	1.0	0.9599
AT2G47130		AtSDR3	short-chain dehydrogenase/redu...		Lus10042181 [exp]	2.0	0.9587
AT5G18150			Methyltransferase-related prot...		Lus10005698 [exp]	4.5	0.9550
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10013830 [exp]	4.6	0.9562
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10024363 [exp]	4.9	0.9438
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10008090 [exp]	6.2	0.9426
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009657 [exp]	6.7	0.9480
AT3G06240			F-box family protein (.1)		Lus10001105 [exp]	6.9	0.9499
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10037268 [exp]	7.5	0.9498
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10013026 [exp]	7.7	0.9526

Compare expression of checked genes

Lus10036296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.