Plant FIBer expression Database

Lus10036298 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G58070 275 / 2e-95 ATTIL temperature-induced lipocalin (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019048
[exp]
348 / 3e-124 AT5G58070 298 / 1e-104 temperature-induced lipocalin (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G110800
[exp]
269 / 3e-93 AT5G58070 310 / 3e-109 temperature-induced lipocalin (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0116 Calycin PF08212 Lipocalin_2 Lipocalin-like domain
Representative CDS sequence
>Lus10036298 pacid=23169334 polypeptide=Lus10036298 locus=Lus10036298.g ID=Lus10036298.BGIv1.0 annot-version=v1.0
ATGTCGGGCGACAAGCAAATGGAAGTGGTGAAGGGCCTGGACGTGCAGCGATACATGGGGCGCTGGTACGAGATTGCCTCGTTTCCGTCCCTTTTCCAGC
CCAGAAACGGCCAGGACACCCGCGCCACCTACACTTTGAAAGACGACGGAGCCACCGTCAACGTCCTCAACGAGACCTGGAGCGACGGCAAACGGAGCTC
CATCGAAGGGATCGCGTACAAGGCGGATCCCAATTCCGACGAGGCCAAGCTCAAAGTTAAGTTCTATGTGCCGCCTTTCTTGCCTCTGTTCCCAGTGGTT
GGGGATTACTGGGTTCTCTACATTGACGAGGCTTACCAGTACGCTCTGATTGGCCAGCCTAGCCGCAAGTATCTCTGGATACTGTGCAGGAACCCCCAAA
TGTCGGAAGAAGTGTACAACCAACTGGTGGAGAAGGCAAAAGAAGAAGGGTACGATGTGAGCAAGCTGAAGAGGACAGCACAGAGCGATTCCCCACCAGA
GGCAGACAAAGGTCCTGAAGACAAGAAGGGGTTGTGGTGGATCAAGTCCCTCTTTGGCAAATAA
AA sequence
>Lus10036298 pacid=23169334 polypeptide=Lus10036298 locus=Lus10036298.g ID=Lus10036298.BGIv1.0 annot-version=v1.0
MSGDKQMEVVKGLDVQRYMGRWYEIASFPSLFQPRNGQDTRATYTLKDDGATVNVLNETWSDGKRSSIEGIAYKADPNSDEAKLKVKFYVPPFLPLFPVV
GDYWVLYIDEAYQYALIGQPSRKYLWILCRNPQMSEEVYNQLVEKAKEEGYDVSKLKRTAQSDSPPEADKGPEDKKGLWWIKSLFGK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G58070 ATTIL temperature-induced lipocalin ... Lus10036298
[exp]
0 1
AT4G17940 Tetratricopeptide repeat (TPR)... Lus10024949
[exp]
1.4 0.8613
AT5G58070 ATTIL temperature-induced lipocalin ... Lus10019048
[exp]
3.7 0.8593
AT1G78380 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. ... Lus10042470
[exp]
5.3 0.8564
AT4G30440 GAE1 UDP-D-glucuronate 4-epimerase ... Lus10023213
[exp]
9.3 0.8592
AT5G53940 Yippee family putative zinc-bi... Lus10013992
[exp]
11.0 0.7962
AT3G01400 ARM repeat superfamily protein... Lus10018684
[exp]
13.9 0.8244
AT2G27260 Late embryogenesis abundant (L... Lus10005216
[exp]
15.5 0.8555
AT3G48240 Octicosapeptide/Phox/Bem1p fam... Lus10019490
[exp]
15.5 0.8135
AT4G22240 Plastid-lipid associated prote... Lus10014790
[exp]
15.6 0.8451
AT1G08250 AtADT6, ADT6 Arabidopsis thaliana arogenate... Lus10043369
[exp]
17.3 0.8452

Lus10036298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.