Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30996 234 / 6e-80 NKS1 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1) AT2G24290 219 / 1e-73 Protein of unknown function (DUF1068) (.1) AT2G32580 115 / 1e-32 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) AT1G05070 110 / 1e-30 Protein of unknown function (DUF1068) (.1) AT4G04360 93 / 5e-24 Protein of unknown function (DUF1068) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019053 [exp] 301 / 3e-106 AT2G24290 259 / 1e-89 Protein of unknown function (DUF1068) (.1) Lus10035288 [exp] 116 / 6e-33 AT1G05070 252 / 1e-86 Protein of unknown function (DUF1068) (.1) Lus10030034 [exp] 113 / 9e-32 AT1G05070 250 / 1e-85 Protein of unknown function (DUF1068) (.1) Lus10015556 [exp] 99 / 2e-26 AT1G05070 179 / 4e-58 Protein of unknown function (DUF1068) (.1) Lus10020038 [exp] 96 / 3e-25 AT1G05070 167 / 4e-53 Protein of unknown function (DUF1068) (.1) Lus10029975 [exp] 80 / 5e-19 AT2G32580 109 / 3e-30 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Lus10035349 [exp] 79 / 2e-18 AT2G32580 110 / 2e-30 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G187800 [exp] 261 / 2e-90 AT4G30996 198 / 1e-65 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1) Potri.018G111100 [exp] 258 / 5e-89 AT4G30996 208 / 2e-69 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1) Potri.014G155600 [exp] 122 / 2e-35 AT2G32580 245 / 1e-83 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Potri.002G227100 [exp] 120 / 9e-35 AT2G32580 218 / 6e-73 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Potri.004G006500 [exp] 117 / 2e-33 AT2G32580 206 / 6e-68 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Potri.013G026900 [exp] 105 / 6e-29 AT2G24290 114 / 2e-32 Protein of unknown function (DUF1068) (.1) Potri.005G038000 [exp] 103 / 4e-28 AT1G05070 110 / 7e-31 Protein of unknown function (DUF1068) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06364 [flax] [poplar] DUF1068 Protein of unknown function (DUF1068)
Representative CDS sequence Show only first row Show all	>Lus10036299 pacid=23169363 polypeptide=Lus10036299 locus=Lus10036299.g ID=Lus10036299.BGIv1.0 annot-version=v1.0 ATGTCGAGGAGATCGGGAGCTTGCTTGAGGTGTTGTCTGGTGATATTCGCTGTCGTATCGGCTCTCGGTGTGTGCGGCCCGGCAATCTATTGGAGATTCA AGAAGACGATGCGGCTATCTGATTCAAACGCTTCTTCATGTCCTCCTTGCGCCTGCGATTGTCCGCCTCCCTTGTCTCTCCTCAAGATTGCTCCCGGCTT GGCCAATCTCTCAGTCACAGATTGCGGAAGTAGTGATCCAGAGCTGAAGAAAGAGATGGAGAAGCAGTATGTTGACCTGCTAACGGAGGAGCTAAGACTG CAGGAAGCAGTTGCAGAAGAACACGCACACCACGTGAACATAACATTCGGAGATGCAAAAAGAGTGGCTTCTCAGTACCAAAAGGAAGCAGAGAAGTGTA TCGCTGCGACAGAGACGTGCGAGGGAGCGAGGGAGAGGTCAGAGGCTCTGTTGATTAGGGAGAGGAAGATCACCGCTGTTTGGGAAAGAAGAGCTCACCA AGTGGGTTGGGATGGAGAGTAA
AA sequence Show only first row Show all	>Lus10036299 pacid=23169363 polypeptide=Lus10036299 locus=Lus10036299.g ID=Lus10036299.BGIv1.0 annot-version=v1.0 MSRRSGACLRCCLVIFAVVSALGVCGPAIYWRFKKTMRLSDSNASSCPPCACDCPPPLSLLKIAPGLANLSVTDCGSSDPELKKEMEKQYVDLLTEELRL QEAVAEEHAHHVNITFGDAKRVASQYQKEAEKCIAATETCEGARERSEALLIRERKITAVWERRAHQVGWDGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24290			Protein of unknown function (D...		Lus10036299 [exp]	0	1
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035330 [exp]	1.4	0.8302
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10000046 [exp]	2.8	0.8148
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10006571 [exp]	4.0	0.8441
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Lus10037102 [exp]	5.0	0.8109
AT5G11000			Plant protein of unknown funct...		Lus10005342 [exp]	6.3	0.7799
AT2G24290			Protein of unknown function (D...		Lus10019053 [exp]	6.5	0.7859
AT5G42860			unknown protein		Lus10010231 [exp]	11.0	0.7791
AT1G57680			unknown protein		Lus10028891 [exp]	11.2	0.7575
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10033902 [exp]	13.9	0.7762
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10029215 [exp]	14.1	0.7831

Compare expression of checked genes

Lus10036299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.