Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24300 720 / 0 Calmodulin-binding protein (.1.2) AT4G31000 665 / 0 Calmodulin-binding protein (.1.2) AT4G25800 577 / 0 Calmodulin-binding protein (.1.2) AT2G18750 574 / 0 Calmodulin-binding protein (.1.2.3) AT5G57580 564 / 0 Calmodulin-binding protein (.1) AT5G62570 315 / 9e-101 Calmodulin binding protein-like (.1.2) AT1G73805 271 / 3e-84 SARD1 SAR Deficient 1, Calmodulin binding protein-like (.1) AT5G26920 244 / 6e-73 CBP60G Cam-binding protein 60-like G (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019056 [exp] 1144 / 0 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10001630 [exp] 558 / 0 AT5G57580 811 / 0.0 Calmodulin-binding protein (.1) Lus10001436 [exp] 550 / 0 AT5G57580 809 / 0.0 Calmodulin-binding protein (.1) Lus10011248 [exp] 533 / 0 AT5G57580 751 / 0.0 Calmodulin-binding protein (.1) Lus10018437 [exp] 530 / 0 AT5G57580 746 / 0.0 Calmodulin-binding protein (.1) Lus10034121 [exp] 308 / 3e-97 AT5G62570 396 / 1e-133 Calmodulin binding protein-like (.1.2) Lus10020686 [exp] 304 / 8e-95 AT4G25800 334 / 1e-106 Calmodulin-binding protein (.1.2) Lus10029861 [exp] 300 / 3e-93 AT4G25800 332 / 2e-106 Calmodulin-binding protein (.1.2) Lus10043463 [exp] 247 / 1e-72 AT5G62570 306 / 1e-96 Calmodulin binding protein-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G187900 [exp] 859 / 0 AT2G24300 770 / 0.0 Calmodulin-binding protein (.1.2) Potri.018G111200 [exp] 855 / 0 AT2G24300 759 / 0.0 Calmodulin-binding protein (.1.2) Potri.011G043300 [exp] 597 / 0 AT5G57580 770 / 0.0 Calmodulin-binding protein (.1) Potri.004G035100 [exp] 595 / 0 AT5G57580 792 / 0.0 Calmodulin-binding protein (.1) Potri.011G043200 [exp] 587 / 0 AT5G57580 752 / 0.0 Calmodulin-binding protein (.1) Potri.018G095300 [exp] 576 / 0 AT5G57580 820 / 0.0 Calmodulin-binding protein (.1) Potri.015G071800 [exp] 380 / 8e-125 AT5G62570 499 / 4e-173 Calmodulin binding protein-like (.1.2) Potri.012G077000 [exp] 360 / 6e-117 AT5G62570 493 / 1e-170 Calmodulin binding protein-like (.1.2) Potri.013G010700 [exp] 327 / 4e-104 AT4G25800 331 / 6e-106 Calmodulin-binding protein (.1.2) Potri.012G054900 [exp] 313 / 2e-100 AT1G73805 407 / 1e-139 SAR Deficient 1, Calmodulin binding protein-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07887 [flax] [poplar] Calmodulin_bind Calmodulin binding protein-like
Representative CDS sequence Show only first row Show all	>Lus10036301 pacid=23169435 polypeptide=Lus10036301 locus=Lus10036301.g ID=Lus10036301.BGIv1.0 annot-version=v1.0 ATGGATGGTTCCAGAGGGAGGAGAGTGGATAAGAGAGGATATGAACAGAATACTGAAGATGAGAGTGACTGCTTGCCTGAATCCAAGAAACCCAAAATGC CTGCTTTAGCAAGTGTGATTGTGGAAGCTTTGAAGGTGGATAGTTTACAAAGACTTTGCTCATCTCTGGAGCCTCTCTTCCGTAGAATCGTCAGTGAAGA GGTGGAACGTGCTCTATCAAGGATGGGAAATGCTAAACTATCTGGGAGGTCTTCTCCACCGAAATTGCCAGGCCCAGGAGAAAAAAGCCTACAACTTCAT TTCAGAACAAGGATGCCTCCTCATCTGTTCACAGGTGCCAGAGTTGAGGGAGAACAAGGAGCAGCCATCCATGTTGTCTTGATAGATTCAGCTACGGGCA ACGTTGTACAAATGGGCCCAGAATCGTCTGCCAAATTGAACGTTGTGGTTATTGAAGGTGACTTTAATGAGGAGGCTGAAGAAGACTGGACGGCTGAGCA CTTTGAGAATTACGAAGTCAAGGAACGCGAAGGGAAAAGGCCATTGCTGACTGGTGATCTACAGGTGATTCTCAAGGAAGGCGTAGGAACTCTTGGAGAT CTTAGTTTTACTGATAACTCTAGCTGGATAAGGAGCAGGAAGTTCCGGCTCGGTGTCAAGGTTACTCCTGGACACTGTGAAGGGATTCGTGTTCGTGAGG CCAAGACAGAATCTTTTGCTGTTAAAGATCATAGAGGAGAATTGTACAAGAAACATTACCCACCAGCTTTACACGATGAAGTTTGGAGATTGGATAGAAT AGCAAAGGATGGAGCACTGCACAAGAAATTAGTGAAGTCTCAGATAATAACCGTTGAAGACTTCCTCCGGCTTCTAGTTAGGGATCCGCAGAAATTGAGA AGTGTCCTTGGAAGTGGGATGTCCACTAGAATGTGGGAGAATACAGTGGAGCATGCAAAGACGTGCGTCTTAGGAGGCAAGCTTTATGTATACTACACTG ATGGAGTTCATAGTACTGGAGTCGTCTTCAACCATATCTGTGAGCTGAGAGGCCTTATCTCTCAAGGACAGTTTGTTGCCCTTGAATCACTTGACCACAA TCAAAAGCTTTCTGTGGATTCAATAGTGAAACGAGCATATGAGAATTGGCATCAGGTTATAGAATATGATGGTAAGGTCCTAACTGCTCTTTCCACGGCC ATGGTTCCAAATAAAGCCTTGCCACCACCACCACCAGGTCCTGTTGTCAGCACCTCCACCGCTAATTATGAACCACAACAGTTCATCTCAAACAAGCAAC TCTACATCTCCCCTGACTCAAGTTCCCAATGCCAAACCGTTCCCCAACCGGCCCATTTGATCGATTTCCCATTCGTGAGGACAGATCAAAACACAACAAC AACCACCACCACCACCTCCATGAGTAACCATCATCAACAAGCAGCATTGGCCAGCAACATGGACTACATGTCAGTAGCGACTCCTGGTGGCTATAATTCA GGAGGAGACTGGACGCGACCAAAAGGAATGGAGGACTTCTTCGCTGAGGAACTCAGGCTGAGGAGCTCGGAGATGCTGGAGAGTGACGATATGCAAAGGC TGCTGAGGTCATTTGGGATGGGGAATATGGGAAATGGTGGGTTTGGACATGGTTTGGTTCATCCCAGTGATGCTTGTTACTCTTACAGCATTGGAGGAGG TGGGTATGAGCCTCAGATGGATCAAGCTGCTGCATATTCTCAGGATCATGGAAGAGGTGGTTCGTCTGGTAAGGCTGTTGTTGGATGGTTGAAGCTGAAA GCTGCTCTGAGGTGGGGGATTTTCATCAGGAAGAGGGCTGCACAGAGAAGAGCTCAGTTGGTTGAGCTTGATTGA
AA sequence Show only first row Show all	>Lus10036301 pacid=23169435 polypeptide=Lus10036301 locus=Lus10036301.g ID=Lus10036301.BGIv1.0 annot-version=v1.0 MDGSRGRRVDKRGYEQNTEDESDCLPESKKPKMPALASVIVEALKVDSLQRLCSSLEPLFRRIVSEEVERALSRMGNAKLSGRSSPPKLPGPGEKSLQLH FRTRMPPHLFTGARVEGEQGAAIHVVLIDSATGNVVQMGPESSAKLNVVVIEGDFNEEAEEDWTAEHFENYEVKEREGKRPLLTGDLQVILKEGVGTLGD LSFTDNSSWIRSRKFRLGVKVTPGHCEGIRVREAKTESFAVKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLVKSQIITVEDFLRLLVRDPQKLR SVLGSGMSTRMWENTVEHAKTCVLGGKLYVYYTDGVHSTGVVFNHICELRGLISQGQFVALESLDHNQKLSVDSIVKRAYENWHQVIEYDGKVLTALSTA MVPNKALPPPPPGPVVSTSTANYEPQQFISNKQLYISPDSSSQCQTVPQPAHLIDFPFVRTDQNTTTTTTTTSMSNHHQQAALASNMDYMSVATPGGYNS GGDWTRPKGMEDFFAEELRLRSSEMLESDDMQRLLRSFGMGNMGNGGFGHGLVHPSDACYSYSIGGGGYEPQMDQAAAYSQDHGRGGSSGKAVVGWLKLK AALRWGIFIRKRAAQRRAQLVELD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24300			Calmodulin-binding protein (.1...		Lus10036301 [exp]	0	1
AT2G34500		CYP710A1	cytochrome P450, family 710, s...		Lus10028129 [exp]	2.2	0.8881
AT4G34150			Calcium-dependent lipid-bindin...		Lus10014088 [exp]	2.8	0.9348
AT1G56240		ATPP2-B13	phloem protein 2-B13 (.1)		Lus10031471 [exp]	5.3	0.8991
AT4G35600		Kin4, CX32, CST...	kinase 4, CONNEXIN 32, CAST AW...		Lus10024512 [exp]	5.5	0.8694
AT2G41835	C2H2ZnF		zinc finger (C2H2 type, AN1-li...		Lus10007540 [exp]	6.0	0.8899
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031473 [exp]	10.7	0.8877
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031472 [exp]	13.3	0.8689
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10027970 [exp]	17.2	0.8339
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10018631 [exp]	17.9	0.8787
AT4G36500			unknown protein		Lus10014291 [exp]	22.8	0.8624

Compare expression of checked genes

Lus10036301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.