Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19810 380 / 5e-131 ChiC class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19820 334 / 4e-113 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19800 321 / 2e-107 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19750 300 / 8e-100 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19760 292 / 1e-96 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19720 286 / 1e-94 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19730 229 / 2e-72 Glycosyl hydrolase superfamily protein (.1) AT4G19770 221 / 2e-70 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19740 132 / 6e-37 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019060 [exp] 581 / 0 AT4G19810 437 / 1e-149 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10036310 [exp] 343 / 6e-118 AT4G19810 277 / 3e-92 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10036311 [exp] 337 / 3e-114 AT4G19810 377 / 5e-130 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10036315 [exp] 238 / 2e-75 AT4G19820 253 / 3e-81 Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10018329 [exp] 217 / 4e-67 AT4G19810 268 / 1e-86 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10017124 [exp] 207 / 1e-63 AT4G19810 260 / 9e-84 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10019061 [exp] 213 / 2e-62 AT4G21380 338 / 5e-104 receptor kinase 3 (.1) Lus10040021 [exp] 196 / 8e-58 AT4G19810 278 / 5e-89 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10024081 [exp] 150 / 1e-39 AT1G61500 333 / 5e-102 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G188300 [exp] 461 / 3e-163 AT4G19810 379 / 2e-130 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.006G188400 [exp] 402 / 6e-140 AT4G19810 477 / 2e-169 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.018G111600 [exp] 254 / 7e-78 AT4G23180 377 / 2e-120 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.018G112000 [exp] 233 / 2e-73 AT4G19810 284 / 3e-93 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.018G112100 [exp] 230 / 2e-72 AT4G19810 279 / 3e-91 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.006G262001 [exp] 230 / 4e-72 AT4G19810 283 / 2e-92 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.006G261800 [exp] 231 / 9e-72 AT4G19810 286 / 2e-92 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.018G111900 [exp] 233 / 1e-69 AT3G16030 367 / 2e-114 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.018G111700 [exp] 229 / 1e-68 AT4G23200 363 / 1e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111800 [exp] 229 / 2e-68 AT4G23200 362 / 4e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00704 [flax] [poplar] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Lus10036306 pacid=23169430 polypeptide=Lus10036306 locus=Lus10036306.g ID=Lus10036306.BGIv1.0 annot-version=v1.0 ATGACGCCTTCCATACAACTTATCCCATCCATCTTCGCTGCCGCCTTCCTCCTCCTTATCCACTCCACCGTCGCTCAACTCGCCGTCGTCAGAAGTGGGT ACTGGGTCCCGGAAACTGGGGTTGCTGTCTCGGCTATCAATTCGAACCATTTTACTCACCTCTTCTGCGCATTCGCCGGCGTTGACCCAGTTACCTTCCA ACTCACCGTCTCAACCACGAATCGGAAGCAGTTTATGACCTTTACTCAAACGGTGCAGAGTAAGAAGCCGTCGGTCAGAACCCTTTTGTCGATCGGCGGC GGCGGAGCTAACGTCACTACTTTTGCGGCAATGGCGAGCCAGCCCGGTCGAAGGAAGTCTTTCATTGATACTTCCATAAGCACTGGTCCTTCAATTTCCA CGGCCTCGACCTGGATTGGGAGCTCCCATCCGACAACCGAAATGGAAAATTTCGGATTGCTCTTAACCGAATGGAGAGCCGCTGTGGCAGCCGAGGCAAG AACCTCCGAAAAGCCACCTCTACTCCTATCGGCGGCGGTCCGCTATGTTCCGTACTACTACTCTTCCTGTGTTCCTTACCCTGTTCAAGCAATCTCAAAA TCCTTGGACTGGATCAATTTAATGGCCTATGATTTCTTCGCCCCCGGATGGACGCGGACCACTACCGGTCCTCCTGCGGCTTTGTTCAACCCCGGCCGCC GTGAGAGCGGCGACAATGGCGTCAGTTCGTGGATCCAAGCGGGGTTGGAGGCGAAGAAAATCGTGCTCGGAATACCGTTCTACGGATGGTCGTGGCAGCT TGACGACGCCGGGAACAACGGCCTCTATTCGCCGGCGGACGGGAAGGCGTTGCAGGGAGAAGGATCGGTGGGGTACAATCAAATCAACGCATTTATAGCT CAGAATCGAGCTACGAAAGTGTACAACTCCAGGGTGGTGTCAGATTACTGTTACAGCGGGAGGACTTGGATTGGATACGACGACGTCCAGAGCGTTTCAA CAAAGGTTGCATATGCGAAGAGGAGAGGTTTGCTTGGTTACTTCGCCTGGCATATTAGTGCAGATGATAACTGGACTCTCTCTTCAACAGCATCGCAGAC ATGGGGAGCTTAA
AA sequence Show only first row Show all	>Lus10036306 pacid=23169430 polypeptide=Lus10036306 locus=Lus10036306.g ID=Lus10036306.BGIv1.0 annot-version=v1.0 MTPSIQLIPSIFAAAFLLLIHSTVAQLAVVRSGYWVPETGVAVSAINSNHFTHLFCAFAGVDPVTFQLTVSTTNRKQFMTFTQTVQSKKPSVRTLLSIGG GGANVTTFAAMASQPGRRKSFIDTSISTGPSISTASTWIGSSHPTTEMENFGLLLTEWRAAVAAEARTSEKPPLLLSAAVRYVPYYYSSCVPYPVQAISK SLDWINLMAYDFFAPGWTRTTTGPPAALFNPGRRESGDNGVSSWIQAGLEAKKIVLGIPFYGWSWQLDDAGNNGLYSPADGKALQGEGSVGYNQINAFIA QNRATKVYNSRVVSDYCYSGRTWIGYDDVQSVSTKVAYAKRRGLLGYFAWHISADDNWTLSSTASQTWGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10036306 [exp]	0	1
AT4G20820			FAD-binding Berberine family p...		Lus10023376 [exp]	8.3	0.6593
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10024050 [exp]	12.2	0.6352
					Lus10012676 [exp]	14.5	0.6324
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10014637 [exp]	17.8	0.6299
					Lus10033534 [exp]	19.9	0.6299
					Lus10039990 [exp]	21.8	0.6299
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10038876 [exp]	23.5	0.6299
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10033686 [exp]	23.9	0.5629
AT1G65440		GTB1	global transcription factor gr...		Lus10034231 [exp]	24.9	0.6298
AT1G43780		SCPL44	serine carboxypeptidase-like 4...		Lus10040330 [exp]	25.1	0.6299

Compare expression of checked genes

Lus10036306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.