Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08020 64 / 2e-10 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) AT5G61000 62 / 9e-10 ATRPA70D Replication factor-A protein 1-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006887 [exp] 299 / 2e-90 AT4G19130 63 / 7e-10 Replication factor-A protein 1-related (.1) Lus10001304 [exp] 289 / 1e-88 AT5G08020 40 / 0.006 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10000293 [exp] 280 / 5e-86 ND 48 / 2e-05 Lus10042671 [exp] 262 / 5e-82 ND 41 / 0.001 Lus10003025 [exp] 253 / 5e-76 AT5G61000 57 / 2e-08 Replication factor-A protein 1-related (.1) Lus10042979 [exp] 257 / 1e-74 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10034056 [exp] 243 / 5e-72 AT4G19130 47 / 4e-05 Replication factor-A protein 1-related (.1) Lus10008178 [exp] 234 / 8e-71 ND / Lus10030315 [exp] 207 / 6e-57 AT1G28110 476 / 3e-161 serine carboxypeptidase-like 45 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G061550 [exp] 102 / 1e-22 AT1G52950 76 / 2e-14 Nucleic acid-binding, OB-fold-like protein (.1) Potri.001G165480 [exp] 96 / 2e-21 AT1G52950 52 / 3e-07 Nucleic acid-binding, OB-fold-like protein (.1) Potri.014G182232 [exp] 56 / 4e-08 ND / Potri.006G172600 [exp] 55 / 5e-08 ND / Potri.015G057300 [exp] 56 / 1e-07 AT5G08020 875 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Potri.001G320601 [exp] 53 / 1e-07 ND / Potri.003G004301 [exp] 50 / 1e-06 ND / Potri.003G004401 [exp] 47 / 2e-05 AT1G52950 50 / 9e-07 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF08646 [flax] [poplar] Rep_fac-A_C Replication factor-A C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10036312 pacid=23169314 polypeptide=Lus10036312 locus=Lus10036312.g ID=Lus10036312.BGIv1.0 annot-version=v1.0 ATGGCGATGGCCCCTGTTCTTTTGGACGATTTTAGCTCCGATAATCTTGCCGTCGAACTCCAGTTGCGGCTGCTAAATGCATGGGATATTGGCGATCCCT CAAGACCTGCTAACGTCTACGGCTTTGGCACCCATTGGGTTGATGCCCAGGGAACCTCCATTCAGGGGGAGTCCCACAAAAACTTTGCTTCTGTCCTTCG GTCTCGAATCTCTGTTGGCTCGGTGTACAAACTCACAGGTTTTGGCCTCCGAACCCCTAGGCGGAACTTTCGCACAAGCTCCTTCCGTTATTGTCTTGAT TTGACCCCAACGACTCAATTCCAACTCCAACCACCAACTACGCCTCCATTCCTTGCCGATTCGTTGCAGTATATCGAGTTCGAAGCACTCTCTGGCCGTT TTCACCCGCCATTTTCATATCTCACAGACATTGTCGGTAAAGTTGTGGCTGGTGGTGAACCGGATCATTACCAGCGGGGTTCATCTATTACTCAACTCCA GAAATTAACCATTGCTAATGAAAGGGGTGTTGAGGTTGTTGTATCCCTTTGGGTTAATCTTGCAGAAATCGTAGATGCTGCAACGCTTCGGTTGAATGAT GATGCAAACCCAACCATCATTGCATTTGCTGCTTTTCGCATTTCGCCCTCTCGAGGTGGTGTTACAGCGAATAGTTGCTCAGCAAGCAGGATATGCCTCC ATCAATCAGATTCTCGATCAGACCAGCTTCGTGCATTTATCACGGCTGCGCCTCGCACTGTAACCTACGTTCCTCCCAAGTTTGCCACCCCAGAACAATT ACAGTGCCATTTGCGTGACTCATATCGTACTGTACATGAACTTCTGGCTCTTTTCACTTCTGGAGCGGATCCAGAACCCCATTACCGATGTACTGCAGTT ATCAAGGGTTTTGAAGGTAACACACCATGGTCATACCAAGCATGCCCACATTGCTTCAAGGCTGTTGCTCCTAACCGTGATAGCTTTTGGTGTTCCGTTC ATGATTCAATTCCCGCGGCTGATGTTCAACACAAGTACCGATTGAAGCTAATTGTGTCAGATTCAACTGCCGATGCAACATTTGTTCTACTTGGCATGAC GGCAGAAAGAATACTACCCATATTTGCTGCTGAGTTGGTTCGTGCGTACCCCAATGATTATGGCATATTCCCACCGACAATTGAATTCTTGATAGGGCAA TCTGTTCAGTTTGAAGTCCAGATGCCAAAATTTAGCCATTCACACCCTTTCGGCGATATTCAAATTCGTAACATCTCCGGATTAGTTATTCCCCGTCAAA TGCTGGTTCCTCCGGTCGCTACTCCTATGGTCACCCCATCAAGCCCTCCAAGTACTCATACGACACCTATGCCGGGTGACCCCGAATATGTTGCTCCTGT GCCAACTTACACTCCCCCGCCGACATCACCATCTCATACCTCTCAGGAACTTCCGTTGGATTACTGTTCTCTTATTCTCCTCTGTCAATTGGCATCTCTG ATTTGTGCGTCACCTTCTTTCGAAAAAACTCATGCTAAGATGACAAGTACGCCCAAAAAAACACCCCCTGCAAAACCTACGACAAATGCAAAAAGGACAA CAACGGCGGCTAAGCAACCTCAATCTCCGCAACCTGCATCTCCTTCATTATCCGAGGATGACCAACCCCTCTCTAAAGTTTTTCTTACAAAACGGTCACC TTCTACCTCCCACGCAAGCCAGCTGCCTTTACCAGATCCTTCCGCTGCTGGATCTCCAGTTACCCCAGCCTTTACTCCACCATCGCAGGAACAAGTTCTC GAGCGTGCGCGTTCCATCATGCAGGATGGCTCCGACTATATGAAAAAATCAACAGCTATTTTGAGTACCCTTCGTGCTCCGTCTCTGGTTGGACTTGACA CATCCTCAACTGATATTTCGTCCAAGTCCAAATTGCCTCTTCCTTTGGCAAAAGTTAAACTGGAAAAACTCCAAGCATCTTCTGGTACCGTTCCTATTAC TCCCCAGCCAGTGCTTGGCGATGGGGTGCAGCCACAGCTTGGTCGAGGCATGCGCAGCCAGACCAGAAAACGACTTTTCGACGAGTGA
AA sequence Show only first row Show all	>Lus10036312 pacid=23169314 polypeptide=Lus10036312 locus=Lus10036312.g ID=Lus10036312.BGIv1.0 annot-version=v1.0 MAMAPVLLDDFSSDNLAVELQLRLLNAWDIGDPSRPANVYGFGTHWVDAQGTSIQGESHKNFASVLRSRISVGSVYKLTGFGLRTPRRNFRTSSFRYCLD LTPTTQFQLQPPTTPPFLADSLQYIEFEALSGRFHPPFSYLTDIVGKVVAGGEPDHYQRGSSITQLQKLTIANERGVEVVVSLWVNLAEIVDAATLRLND DANPTIIAFAAFRISPSRGGVTANSCSASRICLHQSDSRSDQLRAFITAAPRTVTYVPPKFATPEQLQCHLRDSYRTVHELLALFTSGADPEPHYRCTAV IKGFEGNTPWSYQACPHCFKAVAPNRDSFWCSVHDSIPAADVQHKYRLKLIVSDSTADATFVLLGMTAERILPIFAAELVRAYPNDYGIFPPTIEFLIGQ SVQFEVQMPKFSHSHPFGDIQIRNISGLVIPRQMLVPPVATPMVTPSSPPSTHTTPMPGDPEYVAPVPTYTPPPTSPSHTSQELPLDYCSLILLCQLASL ICASPSFEKTHAKMTSTPKKTPPAKPTTNAKRTTTAAKQPQSPQPASPSLSEDDQPLSKVFLTKRSPSTSHASQLPLPDPSAAGSPVTPAFTPPSQEQVL ERARSIMQDGSDYMKKSTAILSTLRAPSLVGLDTSSTDISSKSKLPLPLAKVKLEKLQASSGTVPITPQPVLGDGVQPQLGRGMRSQTRKRLFDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10036312 [exp]	0	1
AT5G03450			Transducin/WD40 repeat-like su...		Lus10026534 [exp]	3.6	0.7697
AT3G48480			Cysteine proteinases superfami...		Lus10031938 [exp]	13.6	0.5810
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10015703 [exp]	17.6	0.7075
AT1G09730			Cysteine proteinases superfami...		Lus10000917 [exp]	18.2	0.7119
AT3G25840			Protein kinase superfamily pro...		Lus10021688 [exp]	18.3	0.6787
AT4G10030			alpha/beta-Hydrolases superfam...		Lus10006176 [exp]	21.6	0.7023
AT3G22640		PAP85	cupin family protein (.1)		Lus10022070 [exp]	25.9	0.6733
AT1G15780			unknown protein		Lus10025450 [exp]	28.4	0.6647
AT2G47770		ATTSPO	TSPO(outer membrane tryptophan...		Lus10000500 [exp]	37.4	0.5937
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022651 [exp]	37.8	0.6572

Compare expression of checked genes

Lus10036312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.