Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11330 229 / 3e-67 S-locus lectin protein kinase family protein (.1.2) AT4G03230 230 / 4e-67 S-locus lectin protein kinase family protein (.1) AT4G23200 220 / 4e-65 CRK12 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) AT1G65800 219 / 2e-63 ARK2 receptor kinase 2 (.1) AT1G65790 218 / 3e-63 ARK1 receptor kinase 1 (.1) AT4G23130 215 / 3e-63 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G23180 215 / 3e-63 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23290 213 / 9e-63 CRK21 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.2) AT4G11480 213 / 2e-62 CRK32 cysteine-rich RLK (RECEPTOR-like protein kinase) 32 (.1) AT4G21380 216 / 3e-62 ARK3 receptor kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019060 [exp] 335 / 2e-109 AT4G19810 437 / 1e-149 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10036314 [exp] 263 / 2e-84 AT4G23180 315 / 6e-102 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10019061 [exp] 267 / 6e-82 AT4G21380 338 / 5e-104 receptor kinase 3 (.1) Lus10041639 [exp] 254 / 6e-77 AT4G11900 338 / 7e-104 S-locus lectin protein kinase family protein (.1) Lus10024081 [exp] 254 / 1e-76 AT1G61500 333 / 5e-102 S-locus lectin protein kinase family protein (.1) Lus10040020 [exp] 232 / 5e-74 AT4G23180 246 / 4e-77 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10033752 [exp] 219 / 2e-67 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10020083 [exp] 218 / 9e-67 AT4G21390 427 / 6e-143 S-locus lectin protein kinase family protein (.1) Lus10023391 [exp] 230 / 1e-66 AT1G11300 520 / 5e-168 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G111600 [exp] 327 / 2e-104 AT4G23180 377 / 2e-120 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.018G111800 [exp] 286 / 3e-89 AT4G23200 362 / 4e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111700 [exp] 285 / 8e-89 AT4G23200 363 / 1e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111900 [exp] 284 / 4e-88 AT3G16030 367 / 2e-114 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.018G111751 [exp] 264 / 1e-86 AT4G23290 255 / 2e-81 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.2) Potri.004G023550 [exp] 239 / 3e-72 AT4G05200 541 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.005G014802 [exp] 232 / 3e-71 AT1G11330 454 / 5e-152 S-locus lectin protein kinase family protein (.1.2) Potri.011G027501 [exp] 232 / 9e-70 AT4G23180 553 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G035850 [exp] 224 / 2e-69 AT4G23270 397 / 6e-134 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) Potri.005G014700 [exp] 232 / 2e-68 AT4G21390 671 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10036313 pacid=23169431 polypeptide=Lus10036313 locus=Lus10036313.g ID=Lus10036313.BGIv1.0 annot-version=v1.0 ATGTCGGCCGATTACATTGTTTCGAGCTTGAACAGGTCGAAAACAGGGGCCATGATGGGTTGGATTCTCGCGTTGAAGAATGGAATAGTAGAAATTTGGC AGTCAATAGCATTTGATGCACCAGCTCCCAGGGGAACTGGTAAACACCAGGGGAAGCTGTGGTTAGTCATTACCATTGCAGTTGCAGCAACTCTTGCAAT CGGTCTTGGAATCGTCGTGTCCTATTTCATAAGAAAGAGAAGGTCTAGTTCCAATGACAAGAGAACAGAGGCTTCAGGGTCTATGTTTGTAGCAAATGAG AGAATACCTTCTGGGAATTTTCATGGAAGAAATTTTGGATCAACGAAATTCAGCCTACTGGAAATGAAGAACACCACAAATGGGTTTGCTAATGAAAACA AGCTTGGACAAGGCGGCTATGGCCTTGTGTATAAGGGTGTACTACCTGAAGGAGGAGAAGTAGCTGTAAAAAAGATTTCGAACTCTTCTACTCAAGGATA TGAAGAATTATCGGATTCTGCACGGACAAGGAAGGACATATGTTGGTCTATCAATACATGCCAAACAATAGCTTGGACAAATCCTGTCAGGAAGCTACAA TTAGACTGGGGAAAGAGGGTAGAAATTATAGAAGGGGTCACACAAGGACTTCTTTATCTCCAGAAGTACTCCCGGCTGAGGATTATTCATCCTGACTTAA AACCCAGGAACATTCTTCTTGATTCTGATATGAGCCCGAAAATCTCAGACTTCGGTTTGGCTAGAATCTTCACGAATGATGTGGAAGAAGCTAACACTGA GCGGTTTTTTGTGACATTGTTTATTGTCAACTCTGATAGAGGCTATGCTCCTCCAGAGTATCTGACTGAAGGGCTTTACTCTGCGAAATCGGATGTATTC AGCTTTGGAGTTCTTCTCTTGCGGATGATAAGTGGGAAGATGAATGCTGTGGTTTACGGCCAGCAAAAGAATCTGAGTCTTCTGGATTATGCTTATGAGA TGTGGAAAGCTGGGAAAGGAATGGTACTGATGGATAGCTCATTGGATGACTCTGGATATTCGTGTAATCTGATCAATTGCCGGCAAATTTCTCTACTCCG CATCCAAGGAAATCCTGCAGACAGATTATCAATGGCGGATGTTCCTTTCATGCTTAGGAATGACCCTGCAGCTTTGGCAATTCCTTCAAGGCCGGTTTAT TTTGTTAAGAAGAATGAAACTATGTCGTTTGACTTAGTTTTCTTGTGTGTTAAGGGAGACCAAAACTACGTTGTTTGA
AA sequence Show only first row Show all	>Lus10036313 pacid=23169431 polypeptide=Lus10036313 locus=Lus10036313.g ID=Lus10036313.BGIv1.0 annot-version=v1.0 MSADYIVSSLNRSKTGAMMGWILALKNGIVEIWQSIAFDAPAPRGTGKHQGKLWLVITIAVAATLAIGLGIVVSYFIRKRRSSSNDKRTEASGSMFVANE RIPSGNFHGRNFGSTKFSLLEMKNTTNGFANENKLGQGGYGLVYKGVLPEGGEVAVKKISNSSTQGYEELSDSARTRKDICWSINTCQTIAWTNPVRKLQ LDWGKRVEIIEGVTQGLLYLQKYSRLRIIHPDLKPRNILLDSDMSPKISDFGLARIFTNDVEEANTERFFVTLFIVNSDRGYAPPEYLTEGLYSAKSDVF SFGVLLLRMISGKMNAVVYGQQKNLSLLDYAYEMWKAGKGMVLMDSSLDDSGYSCNLINCRQISLLRIQGNPADRLSMADVPFMLRNDPAALAIPSRPVY FVKKNETMSFDLVFLCVKGDQNYVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03230			S-locus lectin protein kinase ...		Lus10036313 [exp]	0	1
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10002957 [exp]	3.9	1.0000
AT3G20760			Nse4, component of Smc5/6 DNA ...		Lus10004185 [exp]	5.5	1.0000
					Lus10009800 [exp]	7.7	1.0000
					Lus10010778 [exp]	7.7	1.0000
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	9.6	1.0000
					Lus10011848 [exp]	11.6	1.0000
					Lus10011061 [exp]	12.0	1.0000
AT3G25050		XTH3	xyloglucan endotransglucosylas...		Lus10011845 [exp]	13.3	1.0000
AT2G28320			Pleckstrin homology (PH) and l...		Lus10023522 [exp]	14.0	1.0000
					Lus10011759 [exp]	14.7	1.0000

Compare expression of checked genes

Lus10036313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.