Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23180 314 / 2e-101 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT3G16030 316 / 2e-100 CES101 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) AT4G23230 303 / 3e-99 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G23200 303 / 9e-98 CRK12 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) AT1G65800 307 / 3e-97 ARK2 receptor kinase 2 (.1) AT4G21380 306 / 5e-97 ARK3 receptor kinase 3 (.1) AT1G11330 305 / 1e-96 S-locus lectin protein kinase family protein (.1.2) AT3G45860 301 / 1e-96 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1) AT4G23130 300 / 2e-96 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G11530 300 / 3e-96 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019061 [exp] 374 / 1e-123 AT4G21380 338 / 5e-104 receptor kinase 3 (.1) Lus10024081 [exp] 373 / 4e-123 AT1G61500 333 / 5e-102 S-locus lectin protein kinase family protein (.1) Lus10041639 [exp] 370 / 1e-121 AT4G11900 338 / 7e-104 S-locus lectin protein kinase family protein (.1) Lus10033752 [exp] 305 / 1e-101 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10018516 [exp] 320 / 2e-98 AT1G11300 699 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10039731 [exp] 318 / 6e-98 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10023391 [exp] 315 / 7e-98 AT1G11300 520 / 5e-168 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10025784 [exp] 307 / 3e-96 AT3G16030 596 / 0.0 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Lus10039767 [exp] 305 / 3e-96 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G111600 [exp] 411 / 5e-138 AT4G23180 377 / 2e-120 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.018G111700 [exp] 374 / 1e-123 AT4G23200 363 / 1e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111800 [exp] 372 / 3e-123 AT4G23200 362 / 4e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111900 [exp] 369 / 1e-121 AT3G16030 367 / 2e-114 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.001G437950 [exp] 306 / 7e-102 AT4G21390 406 / 5e-135 S-locus lectin protein kinase family protein (.1) Potri.005G014802 [exp] 309 / 9e-102 AT1G11330 454 / 5e-152 S-locus lectin protein kinase family protein (.1.2) Potri.011G027900 [exp] 309 / 2e-100 AT4G23180 542 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.001G441400 [exp] 311 / 2e-99 AT3G16030 523 / 1e-174 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.011G030012 [exp] 308 / 2e-99 AT4G23220 564 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) Potri.004G024632 [exp] 299 / 2e-99 AT4G23180 527 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10036314 pacid=23169382 polypeptide=Lus10036314 locus=Lus10036314.g ID=Lus10036314.BGIv1.0 annot-version=v1.0 ATGGATGCAGGAACAGGAGAGAGAGATGCAGCGTCACTATTCGCGGGGGAGATAGAAGAGAAGAATCCACGAATGGTGGCTGTTCCATATAGCTTTAGGG AACTAGAGAAAGCAACAGATGAATTCTCCATGGGAAACAAGTTGGGTGAAGGTGGATATGGCCCCGTTTACAAGGGTGTGTTGGTAGATGGAGGTGAGAT AGCGGTGAAGAAGTTGTCCACAAACTCCAGCCAAGGTGACGACGAGTTCAAGAACGAAGTCATCCTCACCGCACAACTTCAACACGTTAATCTGGTTAGG GTCTTGGGGTTCTGCATCGACGCCGGCGAACGAATGTTGGTCTACGAGTACTTGCCTGGCAACAGTTTGGACCAATACCTTTTTGATCCTGTGAAGAGCT TGGTGTTGGATTGGATAACAAGAGTTGAAATCATCGAAGGAGTGACTCAGGGGCTTCTTTACCTTCAAGATTATTCCGGCCGCTCTATCATTCACAGAGA CCTTAAACCGGGCAATGTCTTGTTGGATTCAGACTTCAAGGCTAAGATATCTGATTTCGGGATGGCTAGAATATTGAAGAGAGATTCAACGGAAGCAAAC ACCGAACGCATTGCAGGAACAAGAGCATATTGCCCACCAGAGTACCTAGAAAAGGGACAATATTCAAAGAAATCGGATGTGTACAGCTTCGGAATCCTTC TTCTTCAGATCATCAGTGGAAAGAGATGTGTCCCCCGCTATGGCCCTCATGGAGATTTACAACTTCATGTCTATGCATACGAGTTGTGGAAAGAAGGCAA AGGAAGAGAGATAATGGACCCTTCACTGGACGACACAAATTCAGCTTGTAAATTGATTACCTGCTTGAAAATAGCTCTGCTGTGCGTGCAAAGGAAACCA AGGGACAGACCTAGAATGCGACAAGTTTCTTCGATGCTCAGAGATGAAAGTAGCAGCAGCAGCAGTAGTGCCATTGAGAACGTCGGGATCAAGGATGTTA GATCCTATATGTACATATCATCACCCACTAACCATGCTTCCCCTCCCTCGTCAGGACCTTGCTCTCCGAATCATGTCACCATCACAGAACTGGTTGCCCG ATCATGA
AA sequence Show only first row Show all	>Lus10036314 pacid=23169382 polypeptide=Lus10036314 locus=Lus10036314.g ID=Lus10036314.BGIv1.0 annot-version=v1.0 MDAGTGERDAASLFAGEIEEKNPRMVAVPYSFRELEKATDEFSMGNKLGEGGYGPVYKGVLVDGGEIAVKKLSTNSSQGDDEFKNEVILTAQLQHVNLVR VLGFCIDAGERMLVYEYLPGNSLDQYLFDPVKSLVLDWITRVEIIEGVTQGLLYLQDYSGRSIIHRDLKPGNVLLDSDFKAKISDFGMARILKRDSTEAN TERIAGTRAYCPPEYLEKGQYSKKSDVYSFGILLLQIISGKRCVPRYGPHGDLQLHVYAYELWKEGKGREIMDPSLDDTNSACKLITCLKIALLCVQRKP RDRPRMRQVSSMLRDESSSSSSSAIENVGIKDVRSYMYISSPTNHASPPSSGPCSPNHVTITELVARS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10036314 [exp]	0	1
AT2G31390		STH	pfkB-like carbohydrate kinase ...		Lus10039195 [exp]	6.5	0.8111
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10020604 [exp]	9.2	0.8325
AT1G26140			unknown protein		Lus10034406 [exp]	12.4	0.7532
AT5G03980			SGNH hydrolase-type esterase s...		Lus10009325 [exp]	13.7	0.8066
AT1G54520			unknown protein		Lus10006109 [exp]	20.5	0.7958
AT5G46090			Protein of unknown function (D...		Lus10013933 [exp]	28.8	0.7934
					Lus10028069 [exp]	29.3	0.8044
					Lus10019796 [exp]	32.4	0.7336
AT3G54490		RPB5E	"RNA polymerase II fifth large...		Lus10039554 [exp]	36.1	0.7567
					Lus10034979 [exp]	36.4	0.7852

Compare expression of checked genes

Lus10036314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.