Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19820 253 / 3e-81 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19810 248 / 4e-79 ChiC class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19800 220 / 3e-68 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19720 219 / 3e-68 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19750 218 / 9e-68 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19760 217 / 3e-67 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19730 179 / 2e-53 Glycosyl hydrolase superfamily protein (.1) AT4G19770 164 / 3e-48 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19740 99 / 5e-24 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019060 [exp] 266 / 3e-83 AT4G19810 437 / 1e-149 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10036306 [exp] 248 / 4e-79 AT4G19810 397 / 6e-138 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10019061 [exp] 250 / 3e-76 AT4G21380 338 / 5e-104 receptor kinase 3 (.1) Lus10040021 [exp] 231 / 7e-71 AT4G19810 278 / 5e-89 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10036311 [exp] 222 / 3e-69 AT4G19810 377 / 5e-130 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10024081 [exp] 229 / 3e-68 AT1G61500 333 / 5e-102 S-locus lectin protein kinase family protein (.1) Lus10041639 [exp] 226 / 4e-67 AT4G11900 338 / 7e-104 S-locus lectin protein kinase family protein (.1) Lus10018329 [exp] 175 / 6e-51 AT4G19810 268 / 1e-86 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10017124 [exp] 172 / 6e-50 AT4G19810 260 / 9e-84 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G111600 [exp] 281 / 1e-87 AT4G23180 377 / 2e-120 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.018G111900 [exp] 277 / 3e-86 AT3G16030 367 / 2e-114 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.018G111700 [exp] 268 / 6e-83 AT4G23200 363 / 1e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111800 [exp] 263 / 4e-81 AT4G23200 362 / 4e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.006G188300 [exp] 246 / 1e-78 AT4G19810 379 / 2e-130 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.006G188400 [exp] 244 / 1e-77 AT4G19810 477 / 2e-169 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.018G112100 [exp] 224 / 4e-70 AT4G19810 279 / 3e-91 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.018G112000 [exp] 216 / 5e-67 AT4G19810 284 / 3e-93 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.006G262001 [exp] 200 / 3e-60 AT4G19810 283 / 2e-92 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.006G261800 [exp] 198 / 8e-59 AT4G19810 286 / 2e-92 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00704 [flax] [poplar] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Lus10036315 pacid=23169340 polypeptide=Lus10036315 locus=Lus10036315.g ID=Lus10036315.BGIv1.0 annot-version=v1.0 ATGTATCTCAAACTAGTCTTAACTACACTCCCATTTCTGATTTCTCTCAATTCTCAGTTCCTCCAATCTCAGCGGCACACCACCACGTCCCAGTGGATCC AAGCTGGATTGTGGACGTCCGATCGAGGCTTCCCTATCTCCACCGTAAACTCATCCGCATTCACTCATCTCCTTTGTGGATTCGCTAGCGTCGATCCTTC TACATTCAAACTCTCTGTCTCACCTTCCGACGCTGAATCATTCTCCCTCTTCACCTCCACCGTTCGTTCCAAGAATCCCTCCGTTACGACCCTCCTTTCC ATCCGTTGCAACACTACGAATTTCCGCACGTTTTCCTTATTGTTGACCAATTCTTCGTTTCGAGAGTCTTTCATCAACTCTTCTGTTGAATTCGCCCGTA ACTATGGGTTCGACGGGCTGGACCTAGTCTGGTCGTGCCCAGTGAACGTTAATACCACGGCAGCAAATATCGGACACCTTTTTGACAAATGGCGAGTTAG GATTGATGAGGAGGTTGTCCAATCTGGAAACGCTACGTTACTGCTAACAGCTACGCTCTCGTTTTGGCCGATCCCTATTGAGTCCGTGGAAAGAAGCTTG GATTGGGTGCACCTCAGGGCCAGCGAGTACCATTCACCGAAATCGGACGAATCTACTACGGCGGCTCACGCCGCTGTGTACGATCCATCCGGTGGAGGGA CGGATGCCGGCGTGAAAGATTGGATCGGGAAGGGGCTGCCGGCAAGCAAGATGGTACTGTCAGTGCCACTGTACGGATACGCATGGAAGCTTCGAGTGGA GGCGAGGGACGGAGCAGGCGTTAGAGGAGTTGGTTCGCTGGCGGAAGGGGCGGCGATTTCCGGGACTGGGTTTGTCCGTTACGTGGATATTCGGCGGTTT GTGGAGGCGAATCGGGCGCAGGTATATTACAATGGGAGCTACGTAGTGAATTACTGCTGGGTTGGATTGACGTGGATTGGTTACGATGACGTGGAAGCAG TGAGGGCGAAGGTGGAGTATGCTAGACGAATGGGATTGCGTGGATATGCCATGTGGCAGATTCCTTACGATGACAATGGGACGCTCTCACAAGTTGCATT TGCAGGTATAAACTTGTTTAATTTTACCGCCTAA
AA sequence Show only first row Show all	>Lus10036315 pacid=23169340 polypeptide=Lus10036315 locus=Lus10036315.g ID=Lus10036315.BGIv1.0 annot-version=v1.0 MYLKLVLTTLPFLISLNSQFLQSQRHTTTSQWIQAGLWTSDRGFPISTVNSSAFTHLLCGFASVDPSTFKLSVSPSDAESFSLFTSTVRSKNPSVTTLLS IRCNTTNFRTFSLLLTNSSFRESFINSSVEFARNYGFDGLDLVWSCPVNVNTTAANIGHLFDKWRVRIDEEVVQSGNATLLLTATLSFWPIPIESVERSL DWVHLRASEYHSPKSDESTTAAHAAVYDPSGGGTDAGVKDWIGKGLPASKMVLSVPLYGYAWKLRVEARDGAGVRGVGSLAEGAAISGTGFVRYVDIRRF VEANRAQVYYNGSYVVNYCWVGLTWIGYDDVEAVRAKVEYARRMGLRGYAMWQIPYDDNGTLSQVAFAGINLFNFTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19820			Glycosyl hydrolase family prot...		Lus10036315 [exp]	0	1
AT3G15280			unknown protein		Lus10009211 [exp]	2.0	0.6038
AT4G26120			Ankyrin repeat family protein ...		Lus10024842 [exp]	4.0	0.7112
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10004158 [exp]	17.3	0.5807
AT5G44400			FAD-binding Berberine family p...		Lus10027162 [exp]	19.4	0.5807
AT3G05550			Hypoxia-responsive family prot...		Lus10031490 [exp]	21.2	0.5807
					Lus10000984 [exp]	22.9	0.5807
					Lus10017835 [exp]	24.5	0.5807
					Lus10018912 [exp]	26.0	0.5807
					Lus10040014 [exp]	27.4	0.5807
AT1G06770		DRIP1	DREB2A-interacting protein 1 (...		Lus10042532 [exp]	28.7	0.5807

Compare expression of checked genes

Lus10036315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.