Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80710 411 / 1e-137 DRS1 DROUGHT SENSITIVE 1 (.1) AT5G58760 72 / 6e-13 DDB2 damaged DNA binding 2 (.1) AT2G26060 57 / 2e-08 EMB1345 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G10580 56 / 5e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 55 / 6e-08 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G15440 55 / 1e-07 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT5G52820 55 / 1e-07 WD-40 repeat family protein / notchless protein, putative (.1) AT2G16780 50 / 2e-06 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT5G25150 51 / 3e-06 TAF5 TBP-associated factor 5 (.1) AT2G33340 50 / 3e-06 MAC3B MOS4-associated complex 3B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036179 [exp] 70 / 3e-12 AT5G58760 776 / 0.0 damaged DNA binding 2 (.1) Lus10038314 [exp] 69 / 5e-12 AT5G58760 759 / 0.0 damaged DNA binding 2 (.1) Lus10004167 [exp] 61 / 3e-09 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 58 / 2e-08 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10030869 [exp] 56 / 1e-07 AT1G10580 939 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10005074 [exp] 55 / 1e-07 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10027848 [exp] 54 / 2e-07 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10030620 [exp] 53 / 6e-07 AT1G10580 926 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10040464 [exp] 51 / 2e-06 AT4G34460 568 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G112500 [exp] 471 / 3e-161 AT1G80710 512 / 1e-178 DROUGHT SENSITIVE 1 (.1) Potri.001G251000 [exp] 70 / 2e-12 AT5G58760 774 / 0.0 damaged DNA binding 2 (.1) Potri.002G051900 [exp] 54 / 2e-07 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G064600 [exp] 54 / 2e-07 AT1G10580 906 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G221000 [exp] 53 / 4e-07 AT2G26060 523 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G019601 [exp] 53 / 6e-07 AT4G18905 566 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G019833 [exp] 53 / 6e-07 AT4G18905 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G172800 [exp] 52 / 7e-07 AT1G10580 874 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 50 / 4e-06 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 49 / 1e-05 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10036319 pacid=23169325 polypeptide=Lus10036319 locus=Lus10036319.g ID=Lus10036319.BGIv1.0 annot-version=v1.0 ATGGCGCCTCAGACCAAGATGACGGAGTACGAGCGCAAGCGCCTCGAGAACATCCGCCGCAACGACGAGATGATGGCGGCGCTTAAAGTCCATTCCAAAG CTTCGCAGCTCTTAGAGTCTTCCAAACGCCAGAGAGTCGCCGGCGGACAATCGAAGTCCTATAAGCTGACCCCGGAGAATAAATCCAAACCGAATTCGCC GGCGATCATCCGGCGCTCACTCCGAACTCGAGGGATGACGCCCCAAGGGATAGACGGTGCCGTTATTGATGTTCCTCGTTGCGAAACCCTAAAGTTGTCC GCCCCGGAGAACACGTCGCCTCGGGTTTTGGGTCCGTTGAGTATGAATGATGCTTATGACGGAGCTGGGTCGAATCGGACACTGGTTGCTACTCTTTTGT CGATTGATAAGAAGCCTCAAGTGAGTTTGCCGCCGGTTGAGGAAGATTTTGATTTTGACAGAGTAGATGTTGTTAAGAAGGAGGGATTGGGTAATGATGG GGTGGGAGATGTTTTTAAGAAGGAGGAATTGGGTATTGATGGGGTGGGAGGTGTTGTTAAGAAGGAGGAATTTGGGAACGGGGTTTCTTTCAATTCTGTT AAAGTTGAACAAATCTCGGATTCTGATTATTATGGTATTAAGGAAGAGAAGAAGGAAATTGAGAGCATTCTTAAGAAGGAGGAATTTGGGAACGGGGTTT CGTTCAATTCTGTTAAAGCTGAACAAATTGCGGATTCTGATTATTATGGTATTAAGGAAGAGAAGAAGGAAATTGAGAGCATTCTTAAGAAGGAGGAATT TGGGAACGGGGTTTCGTTCAATTCTGTTAAAGCTGAACAAATTGCGGATTCTGATTATTATGGTATTAAGGAAGAGAAGAAGGAAATTGAGAGCATTCTT AATTTGGATTCGATGAAACTGGAGCCTGCAAATGTTGCCAGGGTGGTTCCAGGGAGGATAATGAACGTGAAGTTCTTGCCTTGCAATGATGTGAGGATGG TTCTAGTGGGTAATAAGTCGGGAAATGTTGGATTCTGGAATATGGATTCCAAGATTGACGATGACGGCATATGTTTGTATAGGCCTCATAGCGGCCCCAT TTCTGGGATTGTGTTCCAGGAATCCTGCTTCTCTAAGATCTATACGAGTTGCTATGATGGTTACATTCGCTTGATGGATGCTGAGAAGGAAGTCTTCAAT CTTGTACACCACAGTGAGGAGACTGTATTTTGCCTCTCCAGGCGGCCAAATGACGACAAAAGCTTATATTTTGGCGAAGGTCTTGGAGGCTTAACTGTAT GGGATGAGAAGATGGGGAAAACTTCAGCACAATGGTATCCTCATGAGCACAGGATCAACACTATACATTTCAATCCACTAAACCCTAATATGATGGCTAC TAGTTCCACGGATGGAACTGCTCGTATTTGGGACTTGAGAAGTGTAAGTTCAAATAAACAACCCAAATGTCTGAAGATGGTCAGTCACAATAGAGCCGTG CATTCTGCTTACTTCTCACCCTCCGGAAACTCCCTTGCAACAGCAAGTTTGGATGACCATGTGGGAATACAAAGTGGGATCAATTTTGAATACAATTATA TGATACCTCATAATAATATGACAGGAAGATGGATTTCTACATTTAGAGCAATCTGGGGATGGGACGACTCCTACGTCTTTATCGGCAACATGAAACGAGG AGTTGATGTTATATCTCGTGTTCAAAGAACAACAGTGATGACCTTGCAAAGCCCTGAGATGACTGCTATTCCGTGCAGATTCGATGTACATCCTTACCAG GTCGGAATGCTTGCAGGAGCCACCAGTGGTGGCCAAGTTTATGTCTGGACTTCAAGTTAA
AA sequence Show only first row Show all	>Lus10036319 pacid=23169325 polypeptide=Lus10036319 locus=Lus10036319.g ID=Lus10036319.BGIv1.0 annot-version=v1.0 MAPQTKMTEYERKRLENIRRNDEMMAALKVHSKASQLLESSKRQRVAGGQSKSYKLTPENKSKPNSPAIIRRSLRTRGMTPQGIDGAVIDVPRCETLKLS APENTSPRVLGPLSMNDAYDGAGSNRTLVATLLSIDKKPQVSLPPVEEDFDFDRVDVVKKEGLGNDGVGDVFKKEELGIDGVGGVVKKEEFGNGVSFNSV KVEQISDSDYYGIKEEKKEIESILKKEEFGNGVSFNSVKAEQIADSDYYGIKEEKKEIESILKKEEFGNGVSFNSVKAEQIADSDYYGIKEEKKEIESIL NLDSMKLEPANVARVVPGRIMNVKFLPCNDVRMVLVGNKSGNVGFWNMDSKIDDDGICLYRPHSGPISGIVFQESCFSKIYTSCYDGYIRLMDAEKEVFN LVHHSEETVFCLSRRPNDDKSLYFGEGLGGLTVWDEKMGKTSAQWYPHEHRINTIHFNPLNPNMMATSSTDGTARIWDLRSVSSNKQPKCLKMVSHNRAV HSAYFSPSGNSLATASLDDHVGIQSGINFEYNYMIPHNNMTGRWISTFRAIWGWDDSYVFIGNMKRGVDVISRVQRTTVMTLQSPEMTAIPCRFDVHPYQ VGMLAGATSGGQVYVWTSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80710		DRS1	DROUGHT SENSITIVE 1 (.1)		Lus10036319 [exp]	0	1
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Lus10004295 [exp]	1.4	0.9706
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10027632 [exp]	4.5	0.9493
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10019592 [exp]	5.5	0.9557
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Lus10009683 [exp]	6.7	0.9493
AT1G75640			Leucine-rich receptor-like pro...		Lus10033924 [exp]	9.5	0.9353
					Lus10037590 [exp]	9.8	0.9517
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Lus10009052 [exp]	13.4	0.9420
AT5G52910		ATIM	timeless family protein (.1)		Lus10038831 [exp]	14.2	0.9433
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10014235 [exp]	15.3	0.9479
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10028085 [exp]	15.7	0.9426

Compare expression of checked genes

Lus10036319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.