Plant FIBer expression Database

Lus10036320 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G22650 460 / 1e-160 FAD-dependent oxidoreductase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G112600
[exp]
516 / 0 AT2G22650 497 / 1e-175 FAD-dependent oxidoreductase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF01266 DAO FAD dependent oxidoreductase
Representative CDS sequence
>Lus10036320 pacid=23169443 polypeptide=Lus10036320 locus=Lus10036320.g ID=Lus10036320.BGIv1.0 annot-version=v1.0
ATGGAGAGAACATTTGGGGAACGCCTTCAAAACTGTCATAGTTCCCACTTTATCGCGGTCACTCCTAGTCTCTTAGCCTCTTCAGCCGTCGCCGGGCCAT
ATTACTGCCACCATCTCCCGGTGTCATCCAAACTCGCTCAAACTTTTTCGCCAACTCCTCAACTTCCGCAATACGCGGTTCTTGGAGCTGGTTTTGCGGG
TCTCTCCGTAGCTTGGCACTTGCTGAAGCAGAACAGTGATAGAGAGCTGAATCTTCGAGTTGATCTGTATGATGAAGCGGGAATCGGAGGAGGTGCTTCT
GGAGTTTCTGGAGGTCTCCTTCACCCTTATTCTCCGAAAGGTAAGCTTCTATGGCGGGGTTCTGAGTGTTGGAATGAGACGTTGAAGCTTCTAGATGTTG
CGGAAATAGCAGTTCTTCGTTGCAAGGATTCCAATCAACGTCCTCACGGTTCCATTGTCAGGAGGAGGGGCATCTTGAGACCAGGAGTGAACGTGAAGAA
CTTGCAAACCATGGCTGATAATGCTCAGATATGCGATCCAAATTGCAGAATTGACACTATTGATAAGGACTTTGCTCAAACGCTTGTACCCAATTTGTGT
CTGCCACACCACTTGGCCTTCTATCTTCCTGCAGCAGTTAATGTCTACCCTCTGCAGTATCTTCAGGCATTGTTTTTAGCTTGCCAAAATATTGCGAGAG
ACCAGGGTGATGGACGGAAGGAGGTACATTTGCACAAGAAGTCCATTGATAAGCTGCTTGATTTAGAAGGCGAATATGACGCAGTGATTATCTGCTTGGG
TGCGAAAGTAGATATGTTACCTGAGCTATCTGGGAGACTTCCTTTGAGAACATGCAGAGGAGTAGTTGCCCACATGCAATTGCCTGCCCAAGCAAGTGAC
GAGTATCCAGACCATGCACCATCCATACTTTCAGATGCATGGCTTGCTATCCAAGGAACGCACAGCATGTACATGGGTTCTACATGGGAATGGCTGTCGA
GGAATTCATCTCCAGATGTTTCGGCAGATGAAGCGTCGAAAGCTCTTGAGGAGCTCCTGCCGAAAGCCTCAGCCTTTTATCCAGGAATCGGAGGATGGAG
TTTCAGTGGAGCTAAGGCAGGTCTTAGGGCAATGCCACCATCAACTCCACATGGTTCGCTTCCACTTTTGGGCTGTGTAAACGATATTCTAGAGAAAAAT
TGTAACTCTAGATACTGGCTGTTGGGTGGACTTGGTTCAAGAGGTTTGCTGTACCATGCTTGGGCGGGTAAATTGTTGGCTCAAGCTGTACTTTCCTGTA
ATGACCAGCTGATTCCTCATGAACTTGTTGCGTGGAAGAACATAAAGAGATGA
AA sequence
>Lus10036320 pacid=23169443 polypeptide=Lus10036320 locus=Lus10036320.g ID=Lus10036320.BGIv1.0 annot-version=v1.0
MERTFGERLQNCHSSHFIAVTPSLLASSAVAGPYYCHHLPVSSKLAQTFSPTPQLPQYAVLGAGFAGLSVAWHLLKQNSDRELNLRVDLYDEAGIGGGAS
GVSGGLLHPYSPKGKLLWRGSECWNETLKLLDVAEIAVLRCKDSNQRPHGSIVRRRGILRPGVNVKNLQTMADNAQICDPNCRIDTIDKDFAQTLVPNLC
LPHHLAFYLPAAVNVYPLQYLQALFLACQNIARDQGDGRKEVHLHKKSIDKLLDLEGEYDAVIICLGAKVDMLPELSGRLPLRTCRGVVAHMQLPAQASD
EYPDHAPSILSDAWLAIQGTHSMYMGSTWEWLSRNSSPDVSADEASKALEELLPKASAFYPGIGGWSFSGAKAGLRAMPPSTPHGSLPLLGCVNDILEKN
CNSRYWLLGGLGSRGLLYHAWAGKLLAQAVLSCNDQLIPHELVAWKNIKR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G22650 FAD-dependent oxidoreductase f... Lus10036320
[exp]
0 1
AT2G25840 OVA4 ovule abortion 4, Nucleotidyly... Lus10005494
[exp]
1.0 0.9016
AT3G09250 Nuclear transport factor 2 (NT... Lus10022605
[exp]
3.0 0.8947
AT5G07670 RNI-like superfamily protein (... Lus10027217
[exp]
4.7 0.8765
AT1G15720 MYB TRFL5 TRF-like 5 (.1) Lus10024200
[exp]
4.7 0.8488
AT5G24060 Pentatricopeptide repeat (PPR)... Lus10027532
[exp]
4.9 0.8949
AT1G72640 NAD(P)-binding Rossmann-fold s... Lus10000373
[exp]
5.3 0.8928
AT3G03420 Ku70-binding family protein (.... Lus10032105
[exp]
5.8 0.8551
AT5G01510 RUS5 ROOT UV-B SENSITIVE 5, Protein... Lus10027788
[exp]
6.0 0.8799
AT3G56160 Sodium Bile acid symporter fam... Lus10043443
[exp]
6.9 0.8628
AT5G08010 unknown protein Lus10040520
[exp]
7.0 0.8844

Lus10036320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.