Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51350 942 / 0 MORE LATERAL GROWTH1 (MOL1) MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G61480 623 / 0 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT1G08590 513 / 4e-166 Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 503 / 1e-162 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G49670 495 / 9e-160 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 489 / 2e-157 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G75820 482 / 7e-155 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 469 / 5e-150 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT2G25790 421 / 9e-132 Leucine-rich receptor-like protein kinase family protein (.1) AT5G56040 405 / 1e-124 Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019067 [exp] 1774 / 0 AT5G51350 971 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10027221 [exp] 617 / 0 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10038930 [exp] 611 / 0 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10000814 [exp] 552 / 0 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027951 [exp] 540 / 7e-177 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10025943 [exp] 514 / 8e-167 AT4G28650 1284 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10013562 [exp] 494 / 2e-159 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10017267 [exp] 489 / 3e-157 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10039641 [exp] 488 / 2e-156 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G189000 [exp] 1297 / 0 AT5G51350 1058 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.018G113000 [exp] 1285 / 0 AT5G51350 1014 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.001G126100 [exp] 647 / 0 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.003G107600 [exp] 647 / 0 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.019G021700 [exp] 559 / 0 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G048800 [exp] 549 / 4e-180 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G256500 [exp] 542 / 2e-177 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.005G241500 [exp] 524 / 5e-171 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G019900 [exp] 516 / 4e-168 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G073600 [exp] 501 / 6e-162 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10036321 pacid=23169323 polypeptide=Lus10036321 locus=Lus10036321.g ID=Lus10036321.BGIv1.0 annot-version=v1.0 ATGGAGATCTTACGCTGTCTCTACTTGAAGCTGTTCTTCACTTCCTTGTTCATCACCGTGGCTCTTGGTAGTATTGATCCTTATTCTAAAGCGCTTCTGA GCTTAAAATCTGAGTTCGTAGGCGATGATGGCAGTCTGAGTGATTGGTTAGAGCCTTCTGGAGGAGGAAACCCAGCTGAAGAGATATATGCATGCTCATG GTCAGGAGTGAAATGTAACGATAACTCAACAAAGGTTGAAGCTTTGGACCTGTCTTTCAAGAATCTTAGAGGTGCATTGTCGGGGAATCAGTTCAGTATC TTCACCGAGCTGGTGGATCTCAACCTCAGTTACAACTCGTTTTCCGGGCAGCTTCCGACTGGGATTTTCAACCTGACCAAGCTACAAAGTTTGGATATTA GCAGGAACAATCTTTCCGATGAATTCCCAAAGGGGGTTTTCCGTCTACAGAATCTGGTTGTACTTGATGCCTTCAGCAACAGCTTCTCTGGGCCGCTGCC GGCTGAACTTTCCCAGCTTGAACATCTCAAAGTCTTGAATCTAGCTGGAAGTTACTTCAGTGGACCGATTCCATCAGAGTATGGCTCCTTCAAGAGCCTC GAGTTTATTCACCTGGCTGGCAACAACCTCGGCGTTAACATACCACCTGAGCTCGGGAAGCTTAAGACGGTGACGCATATGGAGATCGGCTATAATTCTT ACCAGGGCAGTATTCCGTGGCAATTGGGTAATATGAGTGAGCTCCAATATCTGGACATAGCTGGGGCCAACATATCTGGTCCGATTCCAAGTGAATTCTC CAATCTCACTAAGCTTCATTCATTGTTCCTCTTCAGAAACCAGCTCACTGGGCTGATTCCATGGGAGTTCAGCAGAATCGTGCCTCTGGCAAGCCTAGAT CTTTCTGTCAACCAACTCTCGGGACCCATACCTGAGAGTTTTGCTGAGTTGAAGAATTTAAGGCTGCTTAGTCTCATGTACAATGAACTGAATGGGACCA TCCCTCAAGGTGTTGCAAAGCTTCCTTCATTGGAAACTCTCCTTATATGGAACAATTTCTTCTCAGGATGGCTTCCAGAGAACTTGGGCATGAACTCAAA GCTTCAATGGGTGGATGTTTCCACCAACAATTTCATAGGTAGCGTTCCACCGGGCATTTGTTCAGGAGGTTCTCTAGCCAAGTTGATCCTTTTTTCAAAC AAATTCACTGGAAGTCTCGAACCATCAATCTCAAACTGCTCTTCCCTTGTGCGACTAAGACTAGAAGACAATTCCTTCTCGGGCGAAATCCCTGTGACGT TCAGCCATCTTCCAGAGATCACATACGTAGATCTCTCACGAAACAATTTCACAGGCGGAATTCCCAGTGACATTTCTCAGGCTCCTAAGCTGCAGTACTT CAATATTACAGATAACCCAGTTCTTGGAGGTAATTTACCTGCGGAAATATGGTCTTCGCCAGTGCTCCTAAACTTCTCTGCCTCAGGTTGTAACGTCTCA GGGAATCTTACTGGATTCCAATCCTGCAAATCCATTTCTTTCATTGAGCTAAGCATCAACAACCTTGAAGGAAGCATCCCTGCAAGCGTTTCTAACTGTC GAGCACTTGTGAAGATGAACATAGCCAATAACAAGTTCTCTGGCACCATACCTGATCAGTTTGCAGATCTTCCATCCTTAGCTGAGTTGGACCTGTCACA TAATAATTTTACTGGGAAGATATCAGAAAAGCTTGGCAATTCTTCAAGCTTAGTACTTTTAAATGTATCCTTCAACGATATATCTGGTTCCATTCCTTCT ACCACTATGTTTAAAGCAATGGGTACCAGTGCATATGCTGGAAATCCGAAACTATGTGGAACACCTCTCCAGCCATGCGCAGCTTCAATGACTATATTCC ACGGCAAAGGCACAAGGAAGGTCGCATGGGCATTGCTATTGTCTGCAGCTGTGGTTGTATTAGTGCTGGCCTCAGCGTTGGGAATAATGTACATCCGCAG GCAAGGGAAAGGCGAATGGAAAATGATATCCTTTGGTGGACTCCCCCAATTCACTGCAAGCGATGTTCTGAAGAGCTATGGAGCTACGGAATCAATCAAG CCAGTGCCTCCTTTGTCAGCCACTGTTTGGCAAGCAAATCTTCCCACAGGAATAACAGTTTCAGTGAAAAGGGTTGAGCTGGAGGCAAAGACAATGAATG TCAGCATGGAGTTCATAGTGCGAATTGGAAACGTGAGACACAAAAATCTGACTAGATTGCTAGGGGTTTGCCATAACAAGCATCTAGCCTACCTTTTGTG TGATTACTTCCCCAATGGAACTTTGACCGAGAAGATAGCCACTAAGAGTCATTGGGCAACCAAGTTGAAACTTATAATTGGGATTGCCAGAGGACTCTGC TTTCTTCACCATGATTGCTACCCTGCGATTCCCCATGGAGATCTGAATTCAAGCAACATCATCTTTGACGAAAACATGGAACCACGTTTAGTACAATTCG GATTGAAGTACCTGGAAGAAATTGGTTGTGGCATGTTTACAGCAATACTTTCTGGGAAAGAGACAGGTGAGTTCAATGGCCCCTTAAAGGACGAGCTCTG CAATGATATATACAGCTTTGGGGAGATTATCTTGGAGATCTTGAGTAATGGTAGACTGACTAAAGCTGGAAGCGGTACGCAGAACAAGCCCATGGAAGTG CTGTTGAAAGAAATGTGCAGTGTGGAATCTGTAACTTTGGATTCAATTAAAAGGGAGATAAAACAAGCTCTTAATGTTGCTTTACTCTGCACTAGAAGCA GATCAACTGACAGGCCAACCATGGCAGAAGCGCTGAAGCTTTTATCAGCATCGAGTCCACATATCAAATGA
AA sequence Show only first row Show all	>Lus10036321 pacid=23169323 polypeptide=Lus10036321 locus=Lus10036321.g ID=Lus10036321.BGIv1.0 annot-version=v1.0 MEILRCLYLKLFFTSLFITVALGSIDPYSKALLSLKSEFVGDDGSLSDWLEPSGGGNPAEEIYACSWSGVKCNDNSTKVEALDLSFKNLRGALSGNQFSI FTELVDLNLSYNSFSGQLPTGIFNLTKLQSLDISRNNLSDEFPKGVFRLQNLVVLDAFSNSFSGPLPAELSQLEHLKVLNLAGSYFSGPIPSEYGSFKSL EFIHLAGNNLGVNIPPELGKLKTVTHMEIGYNSYQGSIPWQLGNMSELQYLDIAGANISGPIPSEFSNLTKLHSLFLFRNQLTGLIPWEFSRIVPLASLD LSVNQLSGPIPESFAELKNLRLLSLMYNELNGTIPQGVAKLPSLETLLIWNNFFSGWLPENLGMNSKLQWVDVSTNNFIGSVPPGICSGGSLAKLILFSN KFTGSLEPSISNCSSLVRLRLEDNSFSGEIPVTFSHLPEITYVDLSRNNFTGGIPSDISQAPKLQYFNITDNPVLGGNLPAEIWSSPVLLNFSASGCNVS GNLTGFQSCKSISFIELSINNLEGSIPASVSNCRALVKMNIANNKFSGTIPDQFADLPSLAELDLSHNNFTGKISEKLGNSSSLVLLNVSFNDISGSIPS TTMFKAMGTSAYAGNPKLCGTPLQPCAASMTIFHGKGTRKVAWALLLSAAVVVLVLASALGIMYIRRQGKGEWKMISFGGLPQFTASDVLKSYGATESIK PVPPLSATVWQANLPTGITVSVKRVELEAKTMNVSMEFIVRIGNVRHKNLTRLLGVCHNKHLAYLLCDYFPNGTLTEKIATKSHWATKLKLIIGIARGLC FLHHDCYPAIPHGDLNSSNIIFDENMEPRLVQFGLKYLEEIGCGMFTAILSGKETGEFNGPLKDELCNDIYSFGEIILEILSNGRLTKAGSGTQNKPMEV LLKEMCSVESVTLDSIKREIKQALNVALLCTRSRSTDRPTMAEALKLLSASSPHIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51350		MORE LATERAL GR...	MORE LATERAL GROWTH1, Leucine-...		Lus10036321 [exp]	0	1
AT5G51350		MORE LATERAL GR...	MORE LATERAL GROWTH1, Leucine-...		Lus10019067 [exp]	1.0	0.9289
AT3G30841			Cofactor-independent phosphogl...		Lus10034089 [exp]	3.2	0.8690
AT5G36930			Disease resistance protein (TI...		Lus10033953 [exp]	7.7	0.8980
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000548 [exp]	8.0	0.8928
AT5G36930			Disease resistance protein (TI...		Lus10007813 [exp]	8.1	0.8844
AT5G36930			Disease resistance protein (TI...		Lus10007790 [exp]	9.3	0.8985
AT4G29230	NAC	ANAC075, NST9	NAC domain containing protein ...		Lus10012927 [exp]	11.2	0.8543
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022305 [exp]	12.0	0.8865
AT4G29230	NAC	ANAC075, NST9	NAC domain containing protein ...		Lus10034999 [exp]	13.0	0.8475
AT2G27090			Protein of unknown function (D...		Lus10025550 [exp]	14.9	0.7761

Compare expression of checked genes

Lus10036321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.