Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76600 63 / 4e-13 unknown protein AT1G21010 62 / 6e-13 unknown protein AT2G23690 47 / 2e-07 unknown protein AT3G50800 45 / 7e-07 unknown protein AT5G66580 42 / 1e-05 unknown protein AT4G37240 38 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037249 [exp] 76 / 3e-18 AT1G76600 130 / 4e-38 unknown protein Lus10035664 [exp] 75 / 9e-18 AT1G21010 125 / 4e-36 unknown protein Lus10019659 [exp] 45 / 1e-06 AT5G66580 141 / 4e-44 unknown protein Lus10033761 [exp] 0 / 1 AT1G76600 150 / 1e-45 unknown protein Lus10012442 [exp] 0 / 1 AT1G76600 152 / 2e-46 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G259100 [exp] 60 / 4e-12 AT1G21010 186 / 9e-60 unknown protein Potri.002G002100 [exp] 59 / 7e-12 AT1G21010 163 / 1e-50 unknown protein Potri.007G033400 [exp] 43 / 5e-06 AT2G23690 165 / 7e-53 unknown protein Potri.004G149600 [exp] 43 / 6e-06 AT4G37240 125 / 5e-37 unknown protein Potri.006G105500 [exp] 42 / 1e-05 AT3G03280 65 / 2e-13 unknown protein Potri.006G105600 [exp] 42 / 1e-05 AT3G03280 63 / 9e-13 unknown protein Potri.009G110600 [exp] 41 / 2e-05 AT2G23690 112 / 1e-31 unknown protein Potri.005G130200 [exp] 40 / 5e-05 AT2G23690 174 / 2e-56 unknown protein Potri.018G143700 [exp] 37 / 0.0006 AT5G66580 44 / 7e-06 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036322 pacid=23169346 polypeptide=Lus10036322 locus=Lus10036322.g ID=Lus10036322.BGIv1.0 annot-version=v1.0 ATGATCTCCGTGAGTACGCTCATCCAGTCGCCGTCTTTCAAGTTCTTATCACCTCAGCTTCCAATTACTTCCTCTGCAACTCCGATCTCTTATCCTACGA CGAACCGATCCCCAGTCATGTCATCCGATGCCTTCCTAATCCCTAATCAGTTATATTTCCTACTTCCGATCTCTAAGCTGAATTCGAGGCTCACCGCTCC CGATATGGCTGCTTTGGTTGTTAAGGCTAGCCAGGCTATTCAGAGCTCCAATCGCGGCCGCAAAAAGTCGTCCAGCACCATCTCTCCTGCTTTATTCGTC GACGATTTTACATCGGGATTAGCATCAGAGTGA
AA sequence Show only first row Show all	>Lus10036322 pacid=23169346 polypeptide=Lus10036322 locus=Lus10036322.g ID=Lus10036322.BGIv1.0 annot-version=v1.0 MISVSTLIQSPSFKFLSPQLPITSSATPISYPTTNRSPVMSSDAFLIPNQLYFLLPISKLNSRLTAPDMAALVVKASQAIQSSNRGRKKSSSTISPALFV DDFTSGLASE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76600			unknown protein		Lus10036322 [exp]	0	1
AT5G48540			receptor-like protein kinase-r...		Lus10025875 [exp]	5.5	0.8685
AT4G23030			MATE efflux family protein (.1...		Lus10027417 [exp]	7.2	0.8623
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10010939 [exp]	7.9	0.8620
AT4G24110			unknown protein		Lus10017328 [exp]	8.5	0.8475
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10010938 [exp]	9.2	0.8591
AT1G15380		GLYI4	glyoxylase I 4, Lactoylglutath...		Lus10025971 [exp]	13.2	0.8402
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10034505 [exp]	15.0	0.8578
AT2G41480			Peroxidase superfamily protein...		Lus10015555 [exp]	15.8	0.7934
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10023856 [exp]	16.9	0.8297
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10024302 [exp]	18.2	0.8299

Compare expression of checked genes

Lus10036322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.