Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27150 251 / 3e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G27110 218 / 2e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037232 [exp] 399 / 4e-139 AT1G27150 592 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036690 [exp] 156 / 3e-45 AT1G27150 408 / 1e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020235 [exp] 46 / 2e-05 AT5G16270 371 / 4e-110 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10026862 [exp] 44 / 7e-05 AT5G16270 382 / 3e-114 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G035400 [exp] 275 / 2e-90 AT1G27150 586 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G078500 [exp] 42 / 0.0003 AT5G16270 407 / 2e-123 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036324 pacid=23169339 polypeptide=Lus10036324 locus=Lus10036324.g ID=Lus10036324.BGIv1.0 annot-version=v1.0 ATGGAGGAAGAAGATGACAATGACATGCCTTCTGTTGAAGATACACACCTTCTCGATAATAGTGGATGGTCATCCCGGACTAGGCTGACGCATAACTGGT GGCATGTTGCCCTTTGTTACCTAGAAGGTAATTGCACGATAGTGAAAGCTGTGGAAATCTACGATTTTCGAATCTGGAAGGAGTTGGAACGAGATGATGC CACTGCTCCAGAGGTGTACCTGAATGCTTTAGGCTTGTTGATGCGATTGTCTGTTCGAGGACTGCTTGATGTATTTCGATATCAATTCAAGGTCTTGGCC GATCAAGTAGCAGATAGAGCAAACTGGTTTCTGGAGTGGCACCTTGATGTGTTGATAGTATGGGCCTTGGTGAAATCCGGCAAAATTTCAAAGGCTGATG ATTTACTTAACGGCTTGAAGTCCAGAATTTCTAAGATGAACAAGAAGAAGCAGCAAATTATGCAGAAGGGCATACTGTTGGCTGAAGCCTTGTATGAACA TGCTAAGGGGGACGACAAACGAGCAATGGAAATTCTCGGGCCGGAGTATGATGTCAACGGTTGCAAGATAATCGGGGCATCTGACGAGCAACTCGATGTG TTCAACGAAATCTGGTTCAACATACTGCTGAATGCCGGAGAAGAAACCAAAGCAATCGAAGCGATCGAGAAGCAGATCAACAAGCGCGACGGAACCCCTT TCACATGGCGCCTATTGGTACATCCTCTTTTGAATCACCATTCTTATGTCTAA
AA sequence Show only first row Show all	>Lus10036324 pacid=23169339 polypeptide=Lus10036324 locus=Lus10036324.g ID=Lus10036324.BGIv1.0 annot-version=v1.0 MEEEDDNDMPSVEDTHLLDNSGWSSRTRLTHNWWHVALCYLEGNCTIVKAVEIYDFRIWKELERDDATAPEVYLNALGLLMRLSVRGLLDVFRYQFKVLA DQVADRANWFLEWHLDVLIVWALVKSGKISKADDLLNGLKSRISKMNKKKQQIMQKGILLAEALYEHAKGDDKRAMEILGPEYDVNGCKIIGASDEQLDV FNEIWFNILLNAGEETKAIEAIEKQINKRDGTPFTWRLLVHPLLNHHSYV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10036324 [exp]	0	1
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10037232 [exp]	2.8	0.9725
					Lus10006087 [exp]	8.2	0.9417
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10029572 [exp]	9.3	0.9619
AT1G21000			PLATZ transcription factor fam...		Lus10000952 [exp]	10.1	0.9604
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10027931 [exp]	10.2	0.9527
AT1G10600		AMSH2	associated molecule with the S...		Lus10030613 [exp]	11.0	0.9527
AT4G26400			RING/U-box superfamily protein...		Lus10043027 [exp]	17.1	0.9510
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10022441 [exp]	17.7	0.9449
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10013578 [exp]	18.8	0.9220
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10036978 [exp]	19.8	0.9568

Compare expression of checked genes

Lus10036324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.